Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19765 120 3e-22 seq36865 114 1e-20 seq34520 111 2e-19 seq3015 111 2e-19 >seq19765 Length=1114994 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | |||||||| |||||||| || | Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| ||||||||||| || ||| ||||||| || ||||| || || ||||||| Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 414358 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 414357 CCACCACTCTCTCCCC 414342 >seq36865 Length=2971667 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || | || | || |||||||| |||||||| | Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||| | || | ||||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| || ||||| Sbjct 1669445 CTACTAATCGCTCTCC 1669430 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || || ||||||||||| || ||||||| |||| ||| ||||| ||||| || ||| | Sbjct 1665709 ACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGAA 1665650 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 || || ||||| || || ||||||| ||| |||||| | |||| ||||| Sbjct 1665649 TACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTTCTCTGAGAAGGGGTTC 1665597 >seq34520 Length=2775569 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | |||||||| |||||||| || | Sbjct 505346 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 505287 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| ||||||||||| || || ||||||| || ||||| || || ||||||| Sbjct 505286 TTAGCCAGAAAATAGAAGCAAAAGACCCCAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 505227 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 505226 CCACCACTCTCTCCCC 505211 >seq3015 Length=1951583 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || | || | || |||||||| |||||||| | Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||| | || | ||||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318 Query 19103 CAACTA 19108 | |||| Sbjct 197319 CTACTA 197324 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || || ||||||||||| || ||||||| |||| ||| ||||| ||||| || ||| | Sbjct 198218 ACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGAA 198277 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 || || |||||||| || ||||||| ||| |||||||| |||| ||||| Sbjct 198278 TACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTTCTTTGAGAAGGGGTTC 198330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560955261399720