Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq19765 120 3e-22
seq36865 114 1e-20
seq34520 111 2e-19
seq3015 111 2e-19
>seq19765
Length=1114994
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | |||||||| |||||||| || |
Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
|||||||||| ||||||||||| || ||| ||||||| || ||||| || || |||||||
Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 414358
Query 19103 CAACTAGTCTTTCTCC 19118
| || | ||| || ||
Sbjct 414357 CCACCACTCTCTCCCC 414342
>seq36865
Length=2971667
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || | || | || |||||||| |||||||| |
Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| |||||| | || | ||||||||||||||| ||||| || ||||| ||||||||||| |
Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| || |||||
Sbjct 1669445 CTACTAATCGCTCTCC 1669430
Score = 82.4 bits (90), Expect = 9e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521
|| || ||||||||||| || ||||||| |||| ||| ||||| ||||| || ||| |
Sbjct 1665709 ACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGAA 1665650
Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574
|| || ||||| || || ||||||| ||| |||||| | |||| |||||
Sbjct 1665649 TACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTTCTCTGAGAAGGGGTTC 1665597
>seq34520
Length=2775569
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | |||||||| |||||||| || |
Sbjct 505346 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 505287
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
||| |||||| ||||||||||| || || ||||||| || ||||| || || |||||||
Sbjct 505286 TTAGCCAGAAAATAGAAGCAAAAGACCCCAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 505227
Query 19103 CAACTAGTCTTTCTCC 19118
| || | ||| || ||
Sbjct 505226 CCACCACTCTCTCCCC 505211
>seq3015
Length=1951583
Score = 111 bits (122), Expect = 2e-19
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || | || | || |||||||| |||||||| |
Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| |||||| | || | ||||||||||||||| ||||| || ||||| ||||||||||| |
Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318
Query 19103 CAACTA 19108
| ||||
Sbjct 197319 CTACTA 197324
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521
|| || ||||||||||| || ||||||| |||| ||| ||||| ||||| || ||| |
Sbjct 198218 ACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGAA 198277
Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574
|| || |||||||| || ||||||| ||| |||||||| |||| |||||
Sbjct 198278 TACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTTCTTTGAGAAGGGGTTC 198330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560955261399720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |