Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq39920 131 1e-25 seq29358 123 2e-23 seq74633 104 2e-17 >seq39920 Length=384501 Score = 131 bits (144), Expect = 1e-25 Identities = 132/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| || ||||| || ||||||||||| || || |||||||| ||||| || Sbjct 182367 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATACACCGGACCCAGATC 182308 Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||| || |||| | ||| ||||| ||||| |||| ||| || ||||| ||||| || | Sbjct 182307 TCCTTCCTCCCGATCGCT-AAAGCCGCTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 182249 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||| | || |||||||| || |||||||||| || || || || Sbjct 182248 CCCAGATTCTCACACCCTTCTCTGACAGCTCTTTGGCATTGGTTGAACC 182200 >seq29358 Length=42689 Score = 123 bits (136), Expect = 2e-23 Identities = 134/174 (77%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| || ||||| || ||||||||||| || || ||||| || ||||| || Sbjct 19142 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATC 19083 Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||| || |||| | ||| ||||| |||| |||| ||| || ||||| ||||| || | Sbjct 19082 TCCTTCCTCCCGATCGCT-AAAGCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 19024 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||||||| | || |||||||| || |||||||||| || || || || |||| Sbjct 19023 CCCAGATTCTCACACCCTTCTCTGACAGCTCTTTGGCATTGGTTGAACC-CTGA 18971 >seq74633 Length=229 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 29908 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 29967 |||||||||||||| || || ||||| || || || || || || | |||||| |||||| Sbjct 1 TAGCTGGCGATGTTGAAAGGCACCCCCAGACCGATATCACCAGAGCGCTGGTACAGCTGA 60 Query 29968 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027 ||||| | ||| ||||| ||||||||||||||||| | |||||||| || | ||| Sbjct 61 CACGACAACTCACCGTCTGACACGTAAAACTGACACAACGCATGGCACGGGGGTAACGCC 120 Query 30028 ATGAG 30032 || || Sbjct 121 ATCAG 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407800014027329