Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15552 100 5e-16 seq159452 91.5 3e-13 seq147642 87.8 3e-12 seq36865 87.8 3e-12 seq3015 84.2 4e-11 >seq15552 Length=1137653 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| || || ||||| || || || || | ||| | ||| ||| |||| ||||| Sbjct 1136614 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 1136555 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||| |||||||||||||||||||| ||| ||| ||||||||||| |||| |||||| Sbjct 1136554 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAG 1136495 Query 221242 ACTGTTGCGCAGTCC 221256 |||||| |||| ||| Sbjct 1136494 ACTGTTACGCACTCC 1136480 >seq159452 Length=1242 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| || || ||||| || || || || | ||| | ||| |||| | || ||||| Sbjct 145 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGAT 86 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||| ||||| |||||||||||||| ||| ||| |||||||| || |||| |||||| Sbjct 85 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 26 Query 221242 ACTGTTGCGCAGTCC 221256 |||||| |||| ||| Sbjct 25 ACTGTTACGCACTCC 11 >seq147642 Length=763 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| ||||| |||| |||| || |||||||| || | ||| ||||| |||||||| Sbjct 614 ACCTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTG 673 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || |||||| ||| || |||||||||||||| |||| | Sbjct 674 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 733 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 734 CCGGTCTCTGTCTGAG 749 >seq36865 Length=2971667 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | ||||| ||||| || ||||| |||||||| ||| || || ||| Sbjct 1669427 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTT 1669486 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | |||||||| || || ||||| || Sbjct 1669487 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 1669545 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 1669546 ACTCATCAGCAGAGATGAGG 1669565 >seq3015 Length=1951583 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 ||||| ||||| || ||||| |||||||| ||| || || ||||| ||||||| |||| Sbjct 197322 GTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCTGCCATCTACTGG 197263 Query 25945 CTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 | ||| | ||| || | |||||||| || || ||||| || ||||||||||| || Sbjct 197262 TTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTCATCAGCAGAGA 197204 Query 26004 CGAGG 26008 |||| Sbjct 197203 TGAGG 197199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926938659533120