Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq15552 100 5e-16
seq159452 91.5 3e-13
seq147642 87.8 3e-12
seq36865 87.8 3e-12
seq3015 84.2 4e-11
>seq15552
Length=1137653
Score = 100 bits (110), Expect = 5e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181
||| || || ||||| || || || || | ||| | ||| ||| |||| |||||
Sbjct 1136614 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 1136555
Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241
||| |||||||||||||||||||| ||| ||| ||||||||||| |||| ||||||
Sbjct 1136554 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAG 1136495
Query 221242 ACTGTTGCGCAGTCC 221256
|||||| |||| |||
Sbjct 1136494 ACTGTTACGCACTCC 1136480
>seq159452
Length=1242
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181
||| || || ||||| || || || || | ||| | ||| |||| | || |||||
Sbjct 145 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGAT 86
Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241
||| ||||| |||||||||||||| ||| ||| |||||||| || |||| ||||||
Sbjct 85 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 26
Query 221242 ACTGTTGCGCAGTCC 221256
|||||| |||| |||
Sbjct 25 ACTGTTACGCACTCC 11
>seq147642
Length=763
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791
||||| ||||| |||| |||| || |||||||| || | ||| ||||| ||||||||
Sbjct 614 ACCTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTG 673
Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851
||||||| | || || |||||| ||| || |||||||||||||| |||| |
Sbjct 674 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 733
Query 221852 CCAGTCTCCAGCTGAG 221867
|| ||||| |||||
Sbjct 734 CCGGTCTCTGTCTGAG 749
>seq36865
Length=2971667
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/140 (75%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| || ||||| | ||||| ||||| || ||||| |||||||| ||| || || |||
Sbjct 1669427 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTT 1669486
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988
|| ||||||| |||| | ||| | ||| || | |||||||| || || ||||| ||
Sbjct 1669487 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 1669545
Query 25989 GCTCATCAGCAGGGACGAGG 26008
||||||||||| || ||||
Sbjct 1669546 ACTCATCAGCAGAGATGAGG 1669565
>seq3015
Length=1951583
Score = 84.2 bits (92), Expect = 4e-11
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944
||||| ||||| || ||||| |||||||| ||| || || ||||| ||||||| ||||
Sbjct 197322 GTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCTGCCATCTACTGG 197263
Query 25945 CTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
| ||| | ||| || | |||||||| || || ||||| || ||||||||||| ||
Sbjct 197262 TTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTCATCAGCAGAGA 197204
Query 26004 CGAGG 26008
||||
Sbjct 197203 TGAGG 197199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 926938659533120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |