Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq3398 98.7 1e-15 >seq3398 Length=266309 Score = 98.7 bits (108), Expect = 1e-15 Identities = 220/330 (67%), Gaps = 3/330 (1%) Strand=Plus/Plus Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121 |||| ||||| || || | |||| || ||| ||| || || ||||| || |||||| Sbjct 25862 TCCATACATTTGATTGCTACATCGTCTACTTCTGGGTCAAACTTGTTTGCCAAAAGATGG 25921 Query 160122 TGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATG 160181 || | ||| | ||||| | || ||| || | || | || || || | | | || Sbjct 25922 TGT---TGCTGCACAATCCATTTCAAGTCCCCAGCTCCATAGACACACACTGCCCATCTG 25978 Query 160182 TGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGC 160241 |||| || ||| || ||||| || | || ||| || || ||||| |||| | Sbjct 25979 TGCATCCCAGTGCGTGGTGGGTAGGGATCCCCATTCTTCAGTTCTCCTTCAAAGTAGCTC 26038 Query 160242 CACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGA 160301 |||||||| || | || || | | |||||| || | ||| ||| | | ||| Sbjct 26039 CACTTCACCAAACGAGCAATTGAATTCATGTCCGATTGCTGGTACTTGATGTTTGGAGGA 26098 Query 160302 ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTG 160361 || || ||||| ||||| ||||||| || ||||||| ||| || || || ||| Sbjct 26099 TTGGATCCTGGAACTGAAGGCATTCGCTGTAATGTAGCCCACATGTGCTCATCTGGACTG 26158 Query 160362 TACGTGTCCTTAGACCATTCCATGAACTCT 160391 |||||||| || |||||||||||| ||| Sbjct 26159 TACGTGTCTTTCTCCCATTCCATGAAATCT 26188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576034652403480