Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq21577 109 1e-18 seq12251 105 1e-17 seq32410 89.7 9e-13 >seq21577 Length=2421781 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || || ||||| | ||| | |||||| || || |||||| Sbjct 24569 ATACCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 24628 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || || ||||| ||||| || || || | ||| || |||||| Sbjct 24629 GACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 24688 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| || | || ||| || || | || Sbjct 24689 GGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCC 24748 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || ||||| || |||||||| || | || || ||||| || ||||| Sbjct 24749 ACCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || || ||||| | || | ||| || || || |||||| Sbjct 24341 ATACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 24400 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || || || || | | ||| || |||||| Sbjct 24401 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGA 24460 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| || | || ||| || || | |||| Sbjct 24461 GGAATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 24520 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| | ||| || ||||| || |||||||| || ||||| || ||||| Sbjct 24521 ACTTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || || ||||| | || | || || || || || || Sbjct 25025 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCA 25084 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| | ||| || || || || || || || || | | ||| ||||||||| Sbjct 25085 GACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 25144 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | ||| ||| || ||| | |||| Sbjct 25145 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCA 25204 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatttt 193363 || || || || || || || || || ||||| || ||||| || ||||| || Sbjct 25205 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 25257 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| || | || | ||| || || || ||||| Sbjct 24797 ATACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 24856 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || |||||||| || | | ||| || |||||| Sbjct 24857 GACAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGA 24916 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | || ||| || ||| | |||| Sbjct 24917 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 24976 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || || || || || || || || || || || || || || ||||| Sbjct 24977 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 >seq12251 Length=2530766 Score = 105 bits (116), Expect = 1e-17 Identities = 200/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| || || | || || ||||||||||| || | |||||| || || ||||| || Sbjct 1821572 ACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1821513 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | ||||| || |||||||| || ||||| || ||||| || Sbjct 1821512 CAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGG 1821453 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||| || || ||||| | || | || ||| || ||| | ||| || Sbjct 1821452 AATGCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGAC 1821393 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattttattagtaaa 193372 || || || || || || || || || ||||| ||||| || |||| | ||| | ||| Sbjct 1821392 CTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCA-TCTATAAACAAA 1821334 Query 193373 ataattat------tttaaataatatatactttatattttaacattatatta 193418 | || ||| ||||||| ||||| | ||||| | | | ||||||| Sbjct 1821333 AAAAATATATATACATTAAATATAATATAATATATATATATATA-TATATTA 1821283 >seq32410 Length=743546 Score = 89.7 bits (98), Expect = 9e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 ||||||||||| || | |||||| || || ||||| || || || | ||| || Sbjct 172488 ACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCC 172429 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||||| |||||||| || || ||||| || ||||| || || |||||||| || || Sbjct 172428 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGG 172369 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | || | || ||| || ||| | |||||| || || || || || || Sbjct 172368 ATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTG 172309 Query 193332 CCTGTTAGCGtttttacaaatatttgcat 193360 ||||| | || || || || || ||||| Sbjct 172308 CCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897808162977360