Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 131 2e-25
seq8150 129 5e-25
seq32410 111 1e-19
seq12251 107 2e-18
seq15552 89.7 5e-13
>seq21577
Length=2421781
Score = 131 bits (144), Expect = 2e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || || || || || || || ||| |
Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||| ||||||||||| ||||| || ||||| || ||
Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCA 24224
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| ||||||| || || || |||||||||||| | | |||| ||||| ||
Sbjct 24223 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAA 24164
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913
||| || |||||||| || || ||| |||||
Sbjct 24163 CATCCAGAAGGAATCCACCCTCCACCTGGTG 24133
Score = 125 bits (138), Expect = 6e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || ||||| || || ||| |
Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||| ||||||||||| ||||| || ||||| || ||
Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCA 24908
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| ||||||||||||| || |||||||| ||| | | |||| || || ||
Sbjct 24907 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAA 24848
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913
||| || ||||| || || || ||| |||||
Sbjct 24847 CATCCAGAAGGAGTCCACCCTCCACCTGGTG 24817
Score = 125 bits (138), Expect = 6e-24
Identities = 154/209 (74%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || ||||| || || || || || || ||||| || || |||
Sbjct 25255 GATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 25196
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || ||| || ||||||||||| ||||| || ||||| |||||
Sbjct 25195 CGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCA 25136
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| ||||||| || || || ||| |||| ||| | | |||| ||||| ||
Sbjct 25135 GCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAA 25076
Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910
||| || |||||||| || || || ||||
Sbjct 25075 CATCCAGAAGGAATCCACCCTCCATCTTG 25047
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || |||||||| || ||||| || || | ||||| || |||
Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||| || ||||| || ||||| || ||
Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| || || || |||||||||||| | | | |||| || || |||
Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAAC 24391
Query 24884 ATTCAAAAGGAATCGACACTACA 24906
|| || ||||| || || || ||
Sbjct 24390 ATCCAGAAGGAGTCCACCCTCCA 24368
Score = 111 bits (122), Expect = 1e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | || |||||||| || || || || || ||| | |
Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||||||||| || ||||| || ||||| || ||
Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||||||||||| ||||| |||||| |||| ||| | | |||| || || |||
Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 24619
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || || || || ||||| || ||||
Sbjct 24618 ATCCAGAAAGAGTCCACACTCCATCTTG 24591
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | || || || || || || || || || || ||| |
Sbjct 24114 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24055
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| ||||| || ||||| |||||
Sbjct 24054 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 23995
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| ||||||| || || || |||||||| ||| | | |||| || || |||
Sbjct 23994 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACGCTGTCCGACTACAAC 23935
Query 24884 ATTCAAAAGGAATCGACACTACA 24906
|| || ||||| || || || ||
Sbjct 23934 ATCCAGAAGGAGTCCACCCTGCA 23912
>seq8150
Length=1005622
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || ||||| || || || || || || || || || || |||
Sbjct 148977 GATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 148918
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || ||| || ||||||||||| ||||| || ||||| |||||
Sbjct 148917 CGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGATCA 148858
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| ||||||| || || || |||||||| ||| | | | |||| || || ||
Sbjct 148857 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 148798
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||| || ||||| || || || ||| ||||| | || | | ||||||
Sbjct 148797 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGCCTTAGGGGAGGC 148749
>seq32410
Length=743546
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || ||||| || || || || || || || | |
Sbjct 171823 GATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAG 171882
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||| |||| ||||||||||| || || || || ||
Sbjct 171883 CGACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCA 171942
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||||||||| ||||||||||| ||| | | |||| || || ||
Sbjct 171943 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAA 172002
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||| || || || || || | || | ||| |||| | | ||||||
Sbjct 172003 CATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGGC 172051
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || || || || || || || || | | |
Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || |||||||| ||||||||||| || || || || ||
Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| ||||||||||| ||| | | |||| || || |||
Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| || || || || || | || ||||||||||
Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCG 172494
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || || || || || || || || | | |
Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||| |||| ||||||||||| || || || || ||
Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| ||||||||||| ||| | | |||| || || |||
Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || || || || || | || | ||| |||| | | ||||||
Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGGC 172279
>seq12251
Length=2530766
Score = 107 bits (118), Expect = 2e-18
Identities = 159/219 (73%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | ||||| || || || || || || || || || || || | |
Sbjct 1821344 GATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAG 1821403
Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
|||||| | || |||| || ||||| ||||| ||||||||||| || || || || |
Sbjct 1821404 CGACACCATTGAGAACGTCAAGGCAAAA-ATCCAGGACAAAGAAGGCATTCCCCCTGACC 1821462
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTA 24879
| || | ||||| ||||| || ||||||||||| ||| ||| | || |||| || ||
Sbjct 1821463 AGCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCG-CACAC-TGTCTGACTA 1821520
Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||||| || || || || || | || ||||| ||||
Sbjct 1821521 CAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCG 1821559
>seq15552
Length=1137653
Score = 89.7 bits (98), Expect = 5e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180
|||| || |||||||| | ||||| ||||| || || || || || | || || || |
Sbjct 1133831 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 1133772
Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232
||||||| ||||| || ||||| ||||||||||| || |||||||| || ||
Sbjct 1133771 TGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448974337016440
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