Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq32410 96.9 3e-15 seq12251 89.7 4e-13 >seq32410 Length=743546 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || |||||||| ||||| ||| | || ||| | || Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || ||||||||| | ||| || ||| Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||||||||| || | | ||| || | ||||||||| Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||| || ||||| |||||||| Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTG 172492 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || |||||||| ||||| ||| | || ||| | || Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||| | || ||||||||| | ||| || ||| Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||||||||| || | | ||| || | ||||||||| Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || || ||||| || ||||| Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCA 172254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | ||||| || ||||||||||| | || || || ||||| ||| | || | Sbjct 171816 GTTTATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTG 171875 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 || | |||| || | | | || || |||| | || ||||||||| | ||| Sbjct 171876 AGCCAAGCGACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCC 171935 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 || |||||||| | || | ||| || ||||||||||| || | | ||| || | | Sbjct 171936 CTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTG 171995 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 |||||||||| || || ||||| || ||||| Sbjct 171996 ACTACAACATCCAGAAAGAGTCCACCTTGCA 172026 >seq12251 Length=2530766 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | ||||| || ||||||||||| | || ||||| || || ||| | || | Sbjct 1821337 GTTTATAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCG 1821396 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 || | |||| || | | | || || ||| || || ||||||||| | ||| Sbjct 1821397 AGCCAAGCGACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCC 1821456 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 || |||||||| | |||| ||| || ||||||||||| || | ||| || | | Sbjct 1821457 CTGACCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTG 1821516 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||| || || ||||| || ||||| ||||| || Sbjct 1821517 ACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTG 1821557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398078703989197