Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq32410 96.9 3e-15
seq12251 89.7 4e-13
>seq32410
Length=743546
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || ||||| || || |||||||| ||||| ||| | || ||| | ||
Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || || ||||| || ||||||||| | ||| || |||
Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| | || | ||| || ||||||||||| || | | ||| || | |||||||||
Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || || ||||| || ||||| ||||||||
Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTG 172492
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || ||||| || || |||||||| ||||| ||| | || ||| | ||
Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || || |||| | || ||||||||| | ||| || |||
Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| | || | ||| || ||||||||||| || | | ||| || | |||||||||
Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231
Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758
|| || || ||||| || |||||
Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCA 172254
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/211 (69%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607
||||| | ||||| || ||||||||||| | || || || ||||| ||| | || |
Sbjct 171816 GTTTATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTG 171875
Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667
|| | |||| || | | | || || |||| | || ||||||||| | |||
Sbjct 171876 AGCCAAGCGACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCC 171935
Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727
|| |||||||| | || | ||| || ||||||||||| || | | ||| || | |
Sbjct 171936 CTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTG 171995
Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCA 107758
|||||||||| || || ||||| || |||||
Sbjct 171996 ACTACAACATCCAGAAAGAGTCCACCTTGCA 172026
>seq12251
Length=2530766
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/221 (69%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607
||||| | ||||| || ||||||||||| | || ||||| || || ||| | || |
Sbjct 1821337 GTTTATAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCG 1821396
Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667
|| | |||| || | | | || || ||| || || ||||||||| | |||
Sbjct 1821397 AGCCAAGCGACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCC 1821456
Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727
|| |||||||| | |||| ||| || ||||||||||| || | ||| || | |
Sbjct 1821457 CTGACCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTG 1821516
Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|||||||||| || || ||||| || ||||| ||||| ||
Sbjct 1821517 ACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTG 1821557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398078703989197
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |