Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq21577 147 4e-30 seq32410 131 3e-25 seq12251 127 4e-24 seq16719 87.8 4e-12 >seq21577 Length=2421781 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| |||||| || | || || || || || ||||| || || || || | Sbjct 24342 TACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 24401 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || || ||||| ||||| || | || || || |||| Sbjct 24402 ACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 24461 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || || || ||||| || ||| | || || | Sbjct 24462 GAATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 24521 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || || | |||||| ||||| |||||||| Sbjct 24522 CTTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| |||||| || | || || || || |||||||| || || || || | Sbjct 24570 TACCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG 24629 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| | ||||| || || ||||| | | || || || |||| Sbjct 24630 ACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAG 24689 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || || || ||||| || ||| | ||||| | Sbjct 24690 GAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCA 24749 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || ||||| ||||| ||||| |||||||| Sbjct 24750 CCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 >seq32410 Length=743546 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||||| || | |||| || || |||||||| || || || ||||| Sbjct 172278 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172219 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 172218 AGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172159 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || | |||||| || || || ||||| || || | || || || Sbjct 172158 ATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACC 172099 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||||||||| ||||| || || |||||||| Sbjct 172098 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172052 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| || | ||||| || | |||| || || |||||||| || || || ||||| Sbjct 172507 ACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 172448 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | || ||||| || ||||| || |||||||| | || || || || || || Sbjct 172447 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 172388 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || || || ||||| || || || || ||||| || || | || || || Sbjct 172387 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAAC 172328 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||||||||| ||||| || || |||||||| Sbjct 172327 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 >seq12251 Length=2530766 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| || | |||||| || | |||| || || |||||||| || || || ||||| Sbjct 1821572 ACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1821513 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| ||||| || ||||| |||||||| || | || || || || || || Sbjct 1821512 CAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGG 1821453 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || || || || ||||| || || || ||||| || || | || || || Sbjct 1821452 AATGCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGAC 1821393 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | || || ||||| |||||||| Sbjct 1821392 CTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345 >seq16719 Length=811764 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| ||||||||||||| || ||||| || | || | | || || || Sbjct 712484 GATAGCGTCAGCGCTATGGTGGTACTACATCTCTAAGGGGGTGGAGTTTCTGGACACAGT 712425 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||| ||||| | ||||| |||||||||||||| || ||| | ||||| ||||| ||| Sbjct 712424 GTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTTCTGCACGTCTATCACCATAG 712365 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 || ||||| | | | ||| | ||||| || ||| || | || || || Sbjct 712364 CACAATGTTCATCCTGTGGTGGATCGGCATCAAGTGGGTTCCTGGTGGACA 712314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979761959314647