Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq21577 149 6e-31 seq8150 132 5e-26 seq12251 129 6e-25 seq32410 127 2e-24 seq147642 104 2e-17 >seq21577 Length=2421781 Score = 149 bits (164), Expect = 6e-31 Identities = 156/200 (78%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || |||||||| || |||| | | | ||||| |||||||||| Sbjct 24145 GGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCA-TCCTCCAGCTGCTTGC 24203 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | ||| | || || ||||||||||| ||||| |||||||||||||| ||| ||| || Sbjct 24204 CAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCT 24262 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| |||||| ||||||| || || | ||||| ||| ||||| ||||| Sbjct 24263 TTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGG 24322 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 24323 GTCTTCACAAAGATCTGCAT 24342 Score = 143 bits (158), Expect = 3e-29 Identities = 155/200 (78%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 24829 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCA-TCTTCCAGCTGCTTGC 24887 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | || | || || ||||||||||| ||||| |||||||||||||| ||| ||| || Sbjct 24888 CGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCT 24946 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| |||||| ||||||| || |||| ||||| ||| ||||| ||||| Sbjct 24947 TTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGG 25006 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 25007 GTCTTGACGAAGATCTGCAT 25026 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || |||| | | | || || |||| Sbjct 23911 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCTTCCAGCT 23969 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || ||||| |||||||||||||| ||||| Sbjct 23970 GCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCT 24029 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| |||||| ||||||| || || | ||||| ||| ||||| | Sbjct 24030 TGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAG 24089 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 24090 TCAAGGTCTTCACAAAGATCTGCAT 24114 Score = 141 bits (156), Expect = 9e-29 Identities = 158/206 (77%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || |||||||| || |||| | | | || || | || Sbjct 25051 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCA-TCTTCCAACT 25109 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || |||||||||||||||||||| ||| | Sbjct 25110 GCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGAT-T 25168 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || || | | ||||| |||||| ||||||| || |||| ||||| ||| ||||| Sbjct 25169 TTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCA 25228 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 25229 GTCAGCGTCTTCACAAAGATCTGCAT 25254 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || ||| | | | ||||| |||| Sbjct 24367 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCCTCCAGCT 24425 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || ||||||||||| ||||| ||||||||||| || ||||| Sbjct 24426 GCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCT 24485 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || || | |||| ||||| || | Sbjct 24486 TGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTTTCCAG 24545 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 24546 TTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| | | | || || | ||| ||||| Sbjct 24602 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAACTGTTTGCC 24660 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 24661 GGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTT 24720 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | || ||||| || | |||| |||||| || |||| || Sbjct 24721 GACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGT 24780 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 24781 CTTCACAAAGATCTGCAT 24798 >seq8150 Length=1005622 Score = 132 bits (146), Expect = 5e-26 Identities = 152/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 148780 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 148838 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || || |||||||| || ||||| |||||||||||||| ||| ||| || | Sbjct 148839 AGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCTT 148897 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 148898 TCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGCG 148957 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 148958 TCTTCACAAAGATCTGCAT 148976 Score = 122 bits (134), Expect = 8e-23 Identities = 139/184 (76%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | || || |||| Sbjct 148501 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCA-TCTTCCAGCT 148559 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || ||||||||||| ||||| |||||||||||||| ||||| Sbjct 148560 GCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCT 148619 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| ||||||| || |||| || || ||| ||||| | Sbjct 148620 TGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGATGGTCTTGCCAG 148679 Query 133636 TCAG 133639 |||| Sbjct 148680 TCAG 148683 >seq12251 Length=2530766 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || ||| ||| | || || |||| Sbjct 1821548 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCA-TCTTCCAGCT 1821490 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || |||| | || ||||||||| || || |||||||| ||||| ||| | Sbjct 1821489 GTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTT 1821430 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | ||||| |||||| | ||||| || || | ||||| || ||||| | Sbjct 1821429 TTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGTCTTGCCAG 1821370 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || || |||||||| Sbjct 1821369 TGAGGGTTTTGACAAAGATCTGCAT 1821345 >seq32410 Length=743546 Score = 127 bits (140), Expect = 2e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || ||| | | | || || |||| Sbjct 172255 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCA-TCTTCCAGCT 172197 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || | || ||||||||| || || |||||||| ||||| || || Sbjct 172196 GTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCT 172137 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | ||||| |||||| | ||||| || || | ||||| ||| ||||| | Sbjct 172136 TTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTG 172077 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||| || || ||||| ||||||||| || Sbjct 172076 TCAAGGTCTTGACGAAGATCTGCATGCCT 172048 Score = 127 bits (140), Expect = 2e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || ||| | | | || || |||| Sbjct 172483 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA-TCTTCCAGCT 172425 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || | || ||||||||| || || |||||||| ||||| ||||| Sbjct 172424 GTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCT 172365 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| | ||||| || || | ||||| ||| ||||| | Sbjct 172364 TAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTG 172305 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||| || || ||||| ||||||||| || Sbjct 172304 TCAAGGTCTTGACGAAGATCTGCATGCCT 172276 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || ||| | | | || || |||| Sbjct 172027 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA-TCTTCCAGCT 171969 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || | || ||||||||| || || |||||||| ||||| || || Sbjct 171968 GTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCT 171909 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | ||||| |||||| | ||||| || || | ||||| ||| || || | Sbjct 171908 TTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAG 171849 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || || |||||||| Sbjct 171848 TGAGTGTTTTGACAAAGATCTGCAT 171824 >seq147642 Length=763 Score = 104 bits (114), Expect = 2e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| ||||| | ||||| || ||||||||||| ||||| ||||| || | Sbjct 630 TGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGGT 689 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||||| |||||| || |||||||| |||||||| ||| ||| || || Sbjct 690 TGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTC 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482428741962520