Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq19274 129 7e-25
seq16717 127 2e-24
>seq19274
Length=908987
Score = 129 bits (142), Expect = 7e-25
Identities = 240/350 (69%), Gaps = 12/350 (3%)
Strand=Plus/Minus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
||||| || | || |||| | |||| | ||||| |||||||| | |||| | ||| |
Sbjct 790027 GCCAGCTCCTTCGGAGACGGGAAGTCATCAACGTGGATGAAAGCATTTCCCTGCACGAAG 789968
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065
|| | || ||||| || | || |||||| || | ||||| | ||||| || |
Sbjct 789967 TTCTGATAGTTCTCCCTTGGTGGTCCGAGCACAACAGGTACGG----TGCCAACGGAAAG 789912
Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121
||| || | ||| || || |||||||| |||| | |||||||| || || | |||
Sbjct 789911 CGGGTTGTACAATTTCTCAGTGATATAGTCTTTGTGAATCGAGTTCTCGAATGCCAAATA 789852
Query 177122 GAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179
|||||||||| | || |||| | || |||| | |||| || || || || | |
Sbjct 789851 GAATTTACAGCTTGCGATTGTAGGGAAAT--AGTCCTGGTCGGAAATGTACTCACCAAAT 789794
Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239
| | || ||| |||| | || ||||| || ||| || ||||||| || |||
Sbjct 789793 GCTTGTCCATATGCATGAACCTCGATGTGCTTGTAGAGTTCATTGTAGTATTTCACTCTG 789734
Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289
||||| || ||||||||||||||||| ||| |||| | |||| ||||
Sbjct 789733 ACGTGATCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 789684
>seq16717
Length=2513135
Score = 127 bits (140), Expect = 2e-24
Identities = 237/346 (68%), Gaps = 4/346 (1%)
Strand=Plus/Minus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
||||| || | || |||| | |||| | ||||| |||||||| | |||| | || |
Sbjct 1813658 GCCAGCTCCTTTGGAGACGGGAAGTCATCGACGTGGATGAAAGCATTTCCCTGCACAAAG 1813599
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065
|| | || ||||| || | || |||||| || | |||||| | || | ||| |
Sbjct 1813598 TTCTGATAGTTCTCCCTTGGTGGTCCGAGCACCACGGGTACAGTGCCGACGGAAAGCGGG 1813539
Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125
||| | ||| || || |||||||| |||| | ||||||||||| || | ||| |||
Sbjct 1813538 TTGTACAATTTCTCAGTGATATAGTCTTTGTGAATTGAGTTCTCAAATGCCAAATAAAAT 1813479
Query 177126 TTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183
|||||| | || |||| | || |||| | |||| || || || || | | | |
Sbjct 1813478 TTACAGCTTGCAATTGTAGGGTAAT--AGTCCTGGTCGGAAATGTACTCACCAAATGCTT 1813421
Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGT 177243
|||||| |||| | || ||||| || || || |||||| || ||| ||||
Sbjct 1813420 GTCCGTATGCATGAACCTCGATGTGCTTGTATAGTTCATTGTAGTACTTCACTCTGACGT 1813361
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289
|||| ||||||||||||||||| ||| |||| | |||| ||||
Sbjct 1813360 GGTCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 1813315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577244963540800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |