Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq19274 129 7e-25 seq16717 127 2e-24 >seq19274 Length=908987 Score = 129 bits (142), Expect = 7e-25 Identities = 240/350 (69%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || |||| | |||| | ||||| |||||||| | |||| | ||| | Sbjct 790027 GCCAGCTCCTTCGGAGACGGGAAGTCATCAACGTGGATGAAAGCATTTCCCTGCACGAAG 789968 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || | || ||||| || | || |||||| || | ||||| | ||||| || | Sbjct 789967 TTCTGATAGTTCTCCCTTGGTGGTCCGAGCACAACAGGTACGG----TGCCAACGGAAAG 789912 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 ||| || | ||| || || |||||||| |||| | |||||||| || || | ||| Sbjct 789911 CGGGTTGTACAATTTCTCAGTGATATAGTCTTTGTGAATCGAGTTCTCGAATGCCAAATA 789852 Query 177122 GAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 |||||||||| | || |||| | || |||| | |||| || || || || | | Sbjct 789851 GAATTTACAGCTTGCGATTGTAGGGAAAT--AGTCCTGGTCGGAAATGTACTCACCAAAT 789794 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | || ||| |||| | || ||||| || ||| || ||||||| || ||| Sbjct 789793 GCTTGTCCATATGCATGAACCTCGATGTGCTTGTAGAGTTCATTGTAGTATTTCACTCTG 789734 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 ||||| || ||||||||||||||||| ||| |||| | |||| |||| Sbjct 789733 ACGTGATCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 789684 >seq16717 Length=2513135 Score = 127 bits (140), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || |||| | |||| | ||||| |||||||| | |||| | || | Sbjct 1813658 GCCAGCTCCTTTGGAGACGGGAAGTCATCGACGTGGATGAAAGCATTTCCCTGCACAAAG 1813599 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || | || ||||| || | || |||||| || | |||||| | || | ||| | Sbjct 1813598 TTCTGATAGTTCTCCCTTGGTGGTCCGAGCACCACGGGTACAGTGCCGACGGAAAGCGGG 1813539 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| | ||| || || |||||||| |||| | ||||||||||| || | ||| ||| Sbjct 1813538 TTGTACAATTTCTCAGTGATATAGTCTTTGTGAATTGAGTTCTCAAATGCCAAATAAAAT 1813479 Query 177126 TTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 |||||| | || |||| | || |||| | |||| || || || || | | | | Sbjct 1813478 TTACAGCTTGCAATTGTAGGGTAAT--AGTCCTGGTCGGAAATGTACTCACCAAATGCTT 1813421 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGT 177243 |||||| |||| | || ||||| || || || |||||| || ||| |||| Sbjct 1813420 GTCCGTATGCATGAACCTCGATGTGCTTGTATAGTTCATTGTAGTACTTCACTCTGACGT 1813361 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 |||| ||||||||||||||||| ||| |||| | |||| |||| Sbjct 1813360 GGTCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 1813315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577244963540800