Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 114 3e-20
seq8150 91.5 3e-13
seq32410 89.7 1e-12
>seq21577
Length=2421781
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| ||||| || |||||||| |||||||||||||| || ||||
Sbjct 24567 CAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGTGAC 24508
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| ||||| || ||||| ||| || ||| ||
Sbjct 24507 ACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAG 24448
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||| || |||||| |||| |||||| | || || |||| |||||| ||
Sbjct 24447 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAACATC 24388
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || || || || ||
Sbjct 24387 CAGAAGGAGTCCACCCTCCATCTCGT 24362
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | || || ||||| |||||| | || |||||| ||||
Sbjct 24795 CAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGTGAC 24736
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| ||||| || ||||| ||| || ||| ||
Sbjct 24735 ACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAG 24676
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||||||||| || ||||||||||||||| | ||| || |||| |||||| ||
Sbjct 24675 CGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATC 24616
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||| || || || |||||
Sbjct 24615 CAGAAAGAGTCCACACTCCATCTTGT 24590
Score = 91.5 bits (100), Expect = 3e-13
Identities = 100/132 (76%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306
||||| ||| || ||||| || ||||| ||| || ||| || | || ||||| ||
Sbjct 24948 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGC 24890
Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366
||| |||||| ||||||||||| | ||| || | || |||||| ||||||| ||||| ||
Sbjct 24889 CGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCAC 24830
Query 206367 TCTTCACCTTGT 206378
|| ||||| ||
Sbjct 24829 CCTCCACCTGGT 24818
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|| ||||| || || ||||| ||||||| || ||||||| || ||| | ||||||||||
Sbjct 24818 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 24877
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
|||||||| ||||| ||||| || || || ||
Sbjct 24878 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTG 24909
>seq8150
Length=1005622
Score = 91.5 bits (100), Expect = 3e-13
Identities = 100/132 (76%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306
||||| ||| || ||||| || ||||| ||| || || || | || ||||||||
Sbjct 148898 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGC 148840
Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366
|| |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| ||
Sbjct 148839 TGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCAC 148780
Query 206367 TCTTCACCTTGT 206378
||| ||||| ||
Sbjct 148779 TCTCCACCTGGT 148768
>seq32410
Length=743546
Score = 89.7 bits (98), Expect = 1e-12
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229
||||| ||| |||||| ||||| || || || ||||| | || || || |||
Sbjct 171827 CAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 171883
Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289
||||| | || || ||| |||| | || || |||||||| ||| || |||
Sbjct 171884 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 171943
Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349
|| || | ||||| ||||| || ||| |||||||||| | || ||| | || ||||||
Sbjct 171944 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172003
Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||||| || | || |||||
Sbjct 172004 ATCCAGAAAGAGTCCACCTTGCATCTTGT 172032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179334879464333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |