Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq21577 114 3e-20 seq8150 91.5 3e-13 seq32410 89.7 1e-12 >seq21577 Length=2421781 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||||| || |||||||| |||||||||||||| || |||| Sbjct 24567 CAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGTGAC 24508 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| ||| || ||| || Sbjct 24507 ACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAG 24448 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| |||||| | || || |||| |||||| || Sbjct 24447 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAACATC 24388 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 24387 CAGAAGGAGTCCACCCTCCATCTCGT 24362 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| |||||| | || |||||| |||| Sbjct 24795 CAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGTGAC 24736 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| ||| || ||| || Sbjct 24735 ACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAG 24676 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| || ||||||||||||||| | ||| || |||| |||||| || Sbjct 24675 CGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATC 24616 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || || ||||| Sbjct 24615 CAGAAAGAGTCCACACTCCATCTTGT 24590 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | || ||||| || Sbjct 24948 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGC 24890 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| |||||| ||||||||||| | ||| || | || |||||| ||||||| ||||| || Sbjct 24889 CGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCAC 24830 Query 206367 TCTTCACCTTGT 206378 || ||||| || Sbjct 24829 CCTCCACCTGGT 24818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || ||||||| || ||| | |||||||||| Sbjct 24818 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 24877 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||| ||||| || || || || Sbjct 24878 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTG 24909 >seq8150 Length=1005622 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || || || | || |||||||| Sbjct 148898 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGATCAGCAGCGTCTGATCTTCGC 148840 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| || Sbjct 148839 TGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCAC 148780 Query 206367 TCTTCACCTTGT 206378 ||| ||||| || Sbjct 148779 TCTCCACCTGGT 148768 >seq32410 Length=743546 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| |||||| ||||| || || || ||||| | || || || ||| Sbjct 171827 CAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 171883 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | || || ||| |||| | || || |||||||| ||| || ||| Sbjct 171884 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 171943 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || | ||||| ||||| || ||| |||||||||| | || ||| | || |||||| Sbjct 171944 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172003 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||| || | || ||||| Sbjct 172004 ATCCAGAAAGAGTCCACCTTGCATCTTGT 172032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179334879464333