Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq21577 122 8e-23 seq8150 116 3e-21 seq35953 87.8 2e-12 >seq21577 Length=2421781 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || ||||||||||| || || || Sbjct 23923 CTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAA 23982 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | ||||| || ||||||||| |||||| ||||| | Sbjct 23983 GATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 24042 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||| | ||||| || || || ||||| || ||||| Sbjct 24043 CTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 24102 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 24103 AAAGATCTGCAT 24114 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || || || | || |||| ||| || || || || Sbjct 24607 CTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAA 24666 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||| || |||||| ||| | | Sbjct 24667 GATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTT 24726 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||| | ||||| |||||||| ||||| || ||||| Sbjct 24727 CTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCAC 24786 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 24787 AAAGATCTGCAT 24798 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| | || || || | || ||||||||||| || || || Sbjct 24152 TCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 24211 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | ||||| || |||||||| ||| ||| |||| ||| Sbjct 24212 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCTTTGACGTT 24270 Query 35666 -GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||| | ||||| || || || |||| || ||||| Sbjct 24271 CTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 24330 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 24331 AAAGATCTGCAT 24342 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || || || Sbjct 24379 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAA 24438 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || ||||| || |||||| ||||| | Sbjct 24439 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTT 24498 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| ||||| || || | || || || Sbjct 24499 CTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGAC 24558 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 24559 AAAGATCTGCAT 24570 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || || || | || ||||||||||| || ||||| Sbjct 24835 CTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAA 24894 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || |||||||| ||| ||| |||| || Sbjct 24895 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCTTTGACGT 24953 Query 35665 T-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | || ||||| | ||||| || || || |||| || || | Sbjct 24954 TCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 25013 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 25014 CGAAGATCTGCAT 25026 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| | || || || | || |||| |||||| || || || Sbjct 25064 TCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAG 25123 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| |||||||| || | ||| | || |||||||| ||| ||| || |||| | | Sbjct 25124 ATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATT 25182 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||| | ||||| || || || |||| || ||||| Sbjct 25183 CTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCAC 25242 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 25243 AAAGATCTGCAT 25254 >seq8150 Length=1005622 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || || || Sbjct 148785 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAA 148844 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| |||||||| || | ||||| || |||||||| ||| ||| || |||| | Sbjct 148845 GATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCTTTCACAT 148903 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | || ||||| | ||||| || || || |||| || |||| Sbjct 148904 TCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCA 148963 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 148964 CAAAGATCTGCAT 148976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || |||||||||||||| || || Sbjct 148513 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAA 148572 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | Sbjct 148573 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 148632 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | |||||||| | || ||||| | | ||| || || || |||| Sbjct 148633 CTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGATGGTCTTGCCAGTCA 148682 >seq35953 Length=415359 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 35635 CTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCAC 35694 |||||||||| |||||| ||||| | | | | |||||||| | || ||||| | Sbjct 1388 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAG 1447 Query 35695 CGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||| |||||||| ||||||||||||||||| ||||||||| || Sbjct 1448 GGTGATGGTTTTACCGGTCAAAGTTTTCACAAAGATCTGCATTTTG 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868498278840