Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq21577 122 9e-23 seq32410 120 3e-22 seq12251 120 3e-22 seq8150 118 1e-21 seq15552 91.5 1e-13 seq35953 82.4 8e-11 >seq21577 Length=2421781 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || || || || ||||| || || || |||||||||||| Sbjct 24572 CCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAC 24631 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||||||||| || || |||||||||||||| || || || Sbjct 24632 AGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 24691 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| || | ||||| | |||||| Sbjct 24692 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACC 24751 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||||||||| || || || || || || || ||||| Sbjct 24752 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 24800 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24859 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| |||| ||||||||| || || || Sbjct 24860 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 24919 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| ||||| |||||| || | |||||| | || || Sbjct 24920 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 24979 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| || ||||| Sbjct 24980 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | ||| ||||| || ||||||||||| || |||||||| || | | Sbjct 24116 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 24175 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| | || || ||||| ||||| || || |||| ||||||||| || || || Sbjct 24176 AGC-GTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 24234 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || ||||| ||||| |||||| || | |||||| | || || Sbjct 24235 AATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAAC 24294 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 24295 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || |||| || || || || ||||||||||| || |||||||| || | | Sbjct 25028 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 25087 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || | || || | ||| ||||| || || |||| |||||||||||| || || Sbjct 25088 AGCG-TGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 25146 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || ||||| ||||| ||| || || | |||||| | || || Sbjct 25147 GATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAAC 25206 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || ||||| || || || | || || || || || ||||| || Sbjct 25207 CTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 25257 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||||| || || ||||| ||||| || |||||||||||| Sbjct 24344 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24403 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| ||||||||| || || || Sbjct 24404 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 24463 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || || || || | ||||| | || || Sbjct 24464 ATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACT 24523 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||| || |||| || || || || || ||||| Sbjct 24524 TCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || || ||||| ||||| || |||||||||||| | ||| | Sbjct 23897 AGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGT 23956 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || |||||||| Sbjct 23957 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCC 24016 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| | || || || || || Sbjct 24017 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTG 24076 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || || || || ||||| Sbjct 24077 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114 >seq32410 Length=743546 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| ||||| |||||||| || || | ||||| || || || ||||||||||| | | Sbjct 172506 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172447 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || ||||||||||| ||||| ||||| | |||||| || || || Sbjct 172446 AATG-TGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 172388 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || || || || ||||| || | ||||||| | || || Sbjct 172387 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAAC 172328 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 172327 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| ||||| |||| ||| || || | ||||| || || || ||||||||||| | | Sbjct 172050 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 171991 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || ||||||||||| ||||| ||||| | |||||| || || || Sbjct 171990 AATG-TGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 171932 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || || | ||| ||||| || | |||||| | || || Sbjct 171931 AATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 171872 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || | ||||| || || || ||||| Sbjct 171871 CTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| |||| ||| || || | ||||| || || || ||||||||||| Sbjct 172278 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAG-- 172221 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| | || || ||||||||||| ||||| ||||| | |||||| || || | Sbjct 172220 ACAGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGG 172161 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| || || | ||| ||||| || | |||||| | || | Sbjct 172160 GAATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAA 172101 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || || || || ||||| || ||||| Sbjct 172100 CCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172052 >seq12251 Length=2530766 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| |||| ||| || || | ||||| || || || ||||||||||| Sbjct 1821571 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAG-- 1821514 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || ||||||||||| ||||||||||| | |||||| || || | Sbjct 1821513 ACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGG 1821454 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| || || |||||| ||||| || | |||||| | || | Sbjct 1821453 GAATGCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGA 1821394 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || || || || | ||||| || || || ||||| Sbjct 1821393 CCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345 >seq8150 Length=1005622 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 148750 CCTCCCCTAAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 148809 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| |||||||||||| || || Sbjct 148810 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 148869 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| ||||| ||| || || | |||||| | || || Sbjct 148870 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 148929 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || || || || ||||| || Sbjct 148930 TCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 148979 >seq15552 Length=1137653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| || || | ||| | || ||||| | || |||||||| ||||| || || ||| Sbjct 1133699 GCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATGCTTTACAAGGATGCCTGC 1133758 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| ||||||||| || ||| ||||||||||| ||||| || ||||| | ||| Sbjct 1133759 AACCGCAAAAGCAACCAGCAGAACCTGGGCACCATTAAATGCAGTAACTTGTGCACAGAA 1133818 Query 8353 ATTGTACAGTACA 8365 |||||| |||||| Sbjct 1133819 ATTGTAGAGTACA 1133831 >seq35953 Length=415359 Score = 82.4 bits (90), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 134524 CCTTT-TGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 ||||| |||||||||||||| || ||| || ||| || | ||||||||| || ||| Sbjct 263 CCTTTCTGAATGTTGTAGTCTGAAAGCGTGCGACCGTCTTCCAACTGTTTGCCAGCGAAA 322 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 |||| ||||||||| |||||||| |||||| Sbjct 323 ATCAGACGCTGCTGGTCGGGCGGGATGCCT 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504361240355960