Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq36865 120 4e-22
seq34520 111 2e-19
seq19765 111 2e-19
seq3015 111 2e-19
seq44218 98.7 1e-15
seq14570 98.7 1e-15
seq15552 86.0 9e-12
>seq36865
Length=2971667
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || | |||||||| ||||| || || | || |
Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||| | ||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446
Query 39759 CAACAAGTCTCTCTCC 39774
| || | || ||||||
Sbjct 1669445 CTACTAATCGCTCTCC 1669430
>seq34520
Length=2775569
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || || |||||||||||||| || || | ||| |
Sbjct 505346 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 505287
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || || | ||||||||| || |||||||||| ||||| || || ||||| |
Sbjct 505286 TTAGCCAGAAAATAGAAGCAAAAGACCCCAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 505227
Query 39759 CAACAAGTCTCTCTCC 39774
| || | |||||| ||
Sbjct 505226 CCACCACTCTCTCCCC 505211
>seq19765
Length=1114994
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || || |||||||||||||| || || | ||| |
Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||| || || | ||||||||| ||| |||||||||| ||||| || || ||||| |
Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 414358
Query 39759 CAACAAGTCTCTCTCC 39774
| || | |||||| ||
Sbjct 414357 CCACCACTCTCTCCCC 414342
>seq3015
Length=1951583
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || | |||||||| ||||| || || | || |
Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||| | ||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318
Query 39759 CAAC 39762
| ||
Sbjct 197319 CTAC 197322
>seq44218
Length=785574
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | ||||||||| |||||||||||||| || ||||| |||||||||
Sbjct 785195 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 785254
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| |
Sbjct 785255 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 785314
Query 70111 ATATGCTGAGGTCGTTC 70127
|| || || || || ||
Sbjct 785315 ATGTGTTGTGGCCGCTC 785331
>seq14570
Length=4705
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | ||||||||| |||||||||||||| || ||||| |||||||||
Sbjct 1328 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 1387
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| |
Sbjct 1388 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 1447
Query 70111 ATATGCTGAGGTCGTTC 70127
|| || || || || ||
Sbjct 1448 ATGTGTTGTGGCCGCTC 1464
>seq15552
Length=1137653
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || || || || | ||||||||| || ||||||||||| || ||||| ||||| |||
Sbjct 1131769 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 1131710
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| |
Sbjct 1131709 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 1131650
Query 70111 ATATGCTGAGGTCGTTC 70127
|| || || || || ||
Sbjct 1131649 ATGTGTTGTGGCCGCTC 1131633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685499151519720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |