Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq36865 93.3 3e-14 seq34520 89.7 4e-13 seq30429 87.8 1e-12 seq2979 87.8 1e-12 seq19765 82.4 6e-11 >seq36865 Length=2971667 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 44116 TTCTTTT--GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 ||||||| ||||| ||| | || || ||||||| ||||||||||| ||||| || ||| Sbjct 1669421 TTCTTTTTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGA 1669480 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| ||||| | ||||| |||||| |||| ||||||| || | || | || Sbjct 1669481 TCATTTGCTGCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCC 1669540 Query 44234 AATGAGTTAATAAGTCGTGATGA 44256 ||||| | || || | ||||| Sbjct 1669541 AATGAACTCATCAGCAGAGATGA 1669563 >seq34520 Length=2775569 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||||| ||| | | ||||| || || || || || || || |||||| Sbjct 504660 CGATTTACTCAGGAAGTCCAAGTGACTGAAGCCCGCTGCTTCTACGGTTTCCAGATTGCC 504719 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || || || |||||||||||||| |||| || || |||||||||||| Sbjct 504720 ATGGAAAACATCCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCAAAGAT 504776 >seq30429 Length=2353461 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| | || || |||||| || | |||||||| ||||||||||| |||| Sbjct 2157570 TTTTAGGACTCTATAATAAGTCTGGGAAATTAGTTTTTCTCGGATTAGACAATGCCGGAA 2157511 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| ||||| | |||||||| ||| Sbjct 2157510 AAACAACATTATTGCACATGCTTAAA 2157485 >seq2979 Length=3357060 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| |||| || |||||| || | ||||| || ||||||||||| |||| Sbjct 1582041 TTTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTAGGATTAGACAATGCCGGAA 1582100 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| ||||| | |||||||| ||| Sbjct 1582101 AAACAACATTATTGCACATGCTTAAA 1582126 >seq19765 Length=1114994 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||||||||| || |||||||| ||||| |||||||| || ||| |||| Sbjct 413349 TTTGTCATTTTTCCAATTCAGTACCATGACATCTGGCAGATGTACAAGAAGGCAGAGGCC 413408 Query 43760 TCATTTTGGACAGCAGAAGA 43779 || || ||||| ||||| || Sbjct 413409 TCCTTCTGGACTGCAGAGGA 413428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396660746808865