Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 104 2e-17
seq8150 95.1 1e-14
seq15552 82.4 6e-11
>seq21577
Length=2421781
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076
|||||| || || | |||| || | ||| | || || || || || || ||||||||
Sbjct 23884 ATTGCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 23943
Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136
| || |||| | ||||| ||||| || || ||| | || |||||||| ||||| ||
Sbjct 23944 GGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGG 24003
Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196
|| | || || || || ||||||| |||| | | || | ||||| ||| ||
Sbjct 24004 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTC 24063
Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||| || || || || | ||||| |||| || ||||||||||| ||||||
Sbjct 24064 AACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 24115
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| || | ||| | || || ||||| || || ||||||||| || |||| |
Sbjct 24584 CGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA 24643
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| | |||||| |||||| | || | |||||| || || || || | || || |||
Sbjct 24644 TCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTA 24703
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| || | | | || | ||||| | | ||| || || ||||| ||
Sbjct 24704 TCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATG 24763
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||| || |||| || ||||||||||| ||||||
Sbjct 24764 GTTTTACCAGTCAAGGTCTTCACAAAGATCTGCATA 24799
>seq8150
Length=1005622
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| || | |||| | ||||| ||||| || ||
Sbjct 148780 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCA 148839
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || |||||||| ||||| || || | || || || || ||| || ||||
Sbjct 148840 GCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTC 148899
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| ||| ||||| || || || || | ||||| ||||| ||
Sbjct 148900 ACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGCGTC 148959
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 148960 TTCACAAAGATCTGCAT 148976
>seq15552
Length=1137653
Score = 82.4 bits (90), Expect = 6e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 131645 TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT 131704
|| ||||||||||| || | ||| || | ||| | ||||| ||||||||||||||| |
Sbjct 1132511 TCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTC 1132452
Query 131705 TTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAG 131764
| || ||| |||| | | ||||| | | || ||||| |||||||| |||||||
Sbjct 1132451 TGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAG 1132392
Query 131765 GGTTCCAAATACA 131777
|| |||| ||||
Sbjct 1132391 GGCTCCAGGTACA 1132379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424084166420376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |