Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq147642 109 7e-19 seq15552 109 7e-19 seq19765 82.4 1e-10 >seq147642 Length=763 Score = 109 bits (120), Expect = 7e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||||||| |||||||||| ||| ||||| || ||||| | || || || || Sbjct 616 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 675 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| ||||| |||||| ||||||||||||||||||||||| || || Sbjct 676 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 735 Query 111385 CGTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 736 GGTCTCTGTCTGAGA 750 >seq15552 Length=1137653 Score = 109 bits (120), Expect = 7e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||||||| |||||||||| ||||||||| || ||||| | ||||| || || Sbjct 1133845 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1133786 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| || || |||||| ||||||||||| ||||||||||| || || Sbjct 1133785 CAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCC 1133726 Query 111385 CGTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 1133725 GGTCTCTGTCTGAGA 1133711 >seq19765 Length=1114994 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | ||||||||||| |||||| || || |||||||| || | ||||| Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418 Query 122738 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 | ||||| |||||| ||| || ||||| | |||||||| || |||||| ||||| Sbjct 414417 TTAACCAGAAAATAGAAGCA-AAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAA 414359 Query 122797 GC 122798 || Sbjct 414358 GC 414357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626743176280800