Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq15552 111 2e-19 seq147642 98.7 1e-15 seq159452 86.0 8e-12 seq36865 84.2 3e-11 seq3015 84.2 3e-11 seq19765 82.4 9e-11 >seq15552 Length=1137653 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| Sbjct 1133845 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1133786 Query 118799 CAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAAAGCATGTATGGCGTCC 118857 || ||||| || || | |||| | || || |||||||||||||||||||| || || | Sbjct 1133785 CAGGTTCTGCTGGTT-GCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 1133727 Query 118858 CCGTCTCCGTTTGGGACT 118875 | ||||| || || |||| Sbjct 1133726 CGGTCTCTGTCTGAGACT 1133709 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | || || ||||| | |||||||||| |||| ||| || || |||||| Sbjct 1136580 TAGATGTTGCTAGTATACGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCAGTGGAG 1136521 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || ||||||||||| |||| || || |||||||| Sbjct 1136520 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACG 1136486 >seq147642 Length=763 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| ||| || ||||||||||| | || |||||||| Sbjct 616 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 675 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||||| || || ||| ||| || ||||||||||| |||||||| || || || Sbjct 676 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 735 Query 118859 CGTCTCCGTTTGGGACT 118875 ||||| || || |||| Sbjct 736 GGTCTCTGTCTGAGACT 752 >seq159452 Length=1242 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||||||| | |||||||||| |||| ||| || || |||||| Sbjct 111 TAGATGTTGCTAGTGTATGGCTCGATTGACTCATTGTTTCCCAGGATCTGAGCAGTGGAG 52 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || |||||||| || |||| || || |||||||| Sbjct 51 GCAGTGGGCATAGGAGCCAGCAGCAGACTGTTACG 17 >seq36865 Length=2971667 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 1669457 >seq3015 Length=1951583 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 197307 >seq19765 Length=1114994 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | ||| |||||||| |||||| || || |||||||| || | ||||| Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 | ||||||||||| | | ||| || ||| | |||||||| || |||||| Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACA 414368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617166070473880