Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq147642 93.3 5e-14 seq15552 91.5 2e-13 seq34520 82.4 8e-11 seq19765 82.4 8e-11 >seq147642 Length=763 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || ||||||||||| ||| | ||||||||||| | ||||| |||||||||||| | Sbjct 641 ATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 700 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| ||||||||| |||||| || || |||||||| Sbjct 701 TTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTC 741 >seq15552 Length=1137653 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303 || ||||| || || ||||| | ||||||||||||||||| |||||||| ||||| || Sbjct 1131937 CAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGAC 1131996 Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || || ||| ||||||| | ||| || |||| | || ||||||||| Sbjct 1131997 ACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGGG 1132044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 |||||||||||||| ||| | || |||||||| | ||||| ||||||||| || | Sbjct 1133820 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGG 1133761 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| |||||||| |||||| || || |||||||| Sbjct 1133760 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133720 >seq34520 Length=2775569 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 ||| | || ||||| |||| ||||||| ||| || ||||| || ||||||||||||||| Sbjct 505997 GTGGAAAATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 506056 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| ||||| || || Sbjct 506057 GAGAAGCGAGTCGGCGAGTA 506076 >seq19765 Length=1114994 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 ||| | || ||||| |||| ||||||| ||| || ||||| || ||||||||||||||| Sbjct 415114 GTGGAAAATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 415173 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| ||||| || || Sbjct 415174 GAGAAGCGAGTCGGCGAGTA 415193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547399137975120