Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq147642 93.3 5e-14
seq15552 91.5 2e-13
seq34520 82.4 8e-11
seq19765 82.4 8e-11
>seq147642
Length=763
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
|| ||||||||||| ||| | ||||||||||| | ||||| |||||||||||| |
Sbjct 641 ATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 700
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|| ||||| ||||||||| |||||| || || ||||||||
Sbjct 701 TTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTC 741
>seq15552
Length=1137653
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303
|| ||||| || || ||||| | ||||||||||||||||| |||||||| ||||| ||
Sbjct 1131937 CAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGAC 1131996
Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351
|| || ||| ||||||| | ||| || |||| | || |||||||||
Sbjct 1131997 ACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGGG 1132044
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
|||||||||||||| ||| | || |||||||| | ||||| ||||||||| || |
Sbjct 1133820 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGG 1133761
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|| ||||| |||||||| |||||| || || ||||||||
Sbjct 1133760 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133720
>seq34520
Length=2775569
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398
||| | || ||||| |||| ||||||| ||| || ||||| || |||||||||||||||
Sbjct 505997 GTGGAAAATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 506056
Query 60399 GAGAAGCGGGTCGGGGATTA 60418
|||||||| ||||| || ||
Sbjct 506057 GAGAAGCGAGTCGGCGAGTA 506076
>seq19765
Length=1114994
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398
||| | || ||||| |||| ||||||| ||| || ||||| || |||||||||||||||
Sbjct 415114 GTGGAAAATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 415173
Query 60399 GAGAAGCGGGTCGGGGATTA 60418
|||||||| ||||| || ||
Sbjct 415174 GAGAAGCGAGTCGGCGAGTA 415193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547399137975120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |