Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 179 4e-40
seq8150 179 4e-40
seq12251 156 5e-33
seq32410 136 4e-27
seq130830 105 8e-18
seq34520 82.4 9e-11
seq19765 82.4 9e-11
>seq21577
Length=2421781
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || |||||||| || || |||||||||||| | |
Sbjct 24114 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24055
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||| || |||||||| || |||
Sbjct 24054 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 23995
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || || |||| || || || | ||||| ||
Sbjct 23994 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACGCTGTCCGACTACAAC 23935
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || ||||| ||| |||||||||| || ||
Sbjct 23934 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGTCTTCGTGGGGG 23888
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||||||||||||||| || || || || || ||| | || |||||| | ||
Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || || || ||||| || |||||||| ||||||
Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || ||||||| || ||||| | ||||| ||
Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAAC 24391
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || ||||| ||| ||||||| | |||||
Sbjct 24390 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGG 24344
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||| || |||||||| || || || ||||||||| | |
Sbjct 25254 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 25195
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| |||| |||||||| || |||||||| || || ||||| || |||
Sbjct 25194 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAG 25135
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| | || |||| || || || | || || ||
Sbjct 25134 CAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAAC 25075
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || ||||| ||| ||||||| | |||||
Sbjct 25074 ATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 25028
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||||||| | |
Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | || |||||||| || |||||||| || |||||||| ||||||
Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24223
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || ||||||| || || || | || || ||
Sbjct 24222 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAAC 24163
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || || || || | ||||| | |||||
Sbjct 24162 ATCCAGAAGGAATCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGG 24116
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| || || || ||||||||| | |
Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | || |||||||| || |||||||| || |||||||| ||||||
Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24907
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || ||||| || || |||| || || || | ||||| ||
Sbjct 24906 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 24847
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || || | ||||| | |||||
Sbjct 24846 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGG 24800
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || || || || || ||||||||||| || || ||
Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||||| || || || || ||||| || |||||||| ||||||
Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || || || | || |||| || || || | ||||| ||
Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 24619
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || ||||| ||| ||||||| | |||||
Sbjct 24618 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGGTGG 24572
>seq8150
Length=1005622
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||| || |||||||| || || |||||||||||| | |
Sbjct 148976 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 148917
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| |||| |||||||| || |||||||| || |||||||| || |||
Sbjct 148916 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 148857
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 148856 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 148797
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| || || || | || ||| | || ||
Sbjct 148796 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGCCTTAGGGGAGG 148750
Score = 161 bits (178), Expect = 1e-34
Identities = 160/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 27426 GCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAA 27485
||| || |||||||| || | || ||||||||| | | || | ||||| || | ||
Sbjct 148684 GCTGACTGGCAAGACCATCCCCCTCGAGGTTGAGCCCAGCGACACCATTGAGAACGTCAA 148625
Query 27486 GGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGG 27545
||| || || ||||||||||| || |||||||| |||||||||||||| || || |||||
Sbjct 148624 GGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGG 148565
Query 27546 TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCT 27605
|||||| || || |||| || ||||| | ||||| || |||| ||||| ||||| ||
Sbjct 148564 TAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCT 148505
Query 27606 TCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||| |||||||||| || ||
Sbjct 148504 CCATCTCGTCCTGCGTCTTCGTGGCGG 148478
>seq12251
Length=2530766
Score = 156 bits (172), Expect = 5e-33
Identities = 169/223 (76%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
|||| ||||| ||||||||||| || || || |||||||| || || |||||||| |||
Sbjct 1821340 TATAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGC 1821399
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
|| | || | ||||| || | ||||| ||||| |||||||| || || ||||| || |
Sbjct 1821400 CAAGCGACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTG 1821459
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580
|||||||| | | ||||||||||| || || || || |||| ||| || || | ||||
Sbjct 1821460 ACCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACT 1821519
Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
| || |||| || || ||||| | ||||| || |||||||
Sbjct 1821520 ACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCT 1821562
>seq32410
Length=743546
Score = 136 bits (150), Expect = 4e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || |||||||||||| || |
Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | |||||||| || |||||||| || || ||||| || ||||||
Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || ||||| || || || || || |||| || || | | ||||| ||
Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| || || ||||| | ||||| || ||||||||
Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCT 172497
Score = 132 bits (146), Expect = 5e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || |||||||||||| || |
Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||||| || | |||||||| || || ||||| || ||||||
Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || ||||| || || || || || |||| || || || | ||||| ||
Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| || || ||||| | ||||| || |||||||
Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCT 172269
Score = 129 bits (142), Expect = 7e-25
Identities = 163/223 (73%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
|||| ||||| ||||||||||| || || || || ||||| || || ||||||||||||
Sbjct 171819 TATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGC 171878
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
|| | || | ||||| || | ||||| || | |||||||| || || ||||| || |
Sbjct 171879 CAAGCGACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTG 171938
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580
|||||||| | | || ||||| || || || || || |||| || || | | ||||
Sbjct 171939 ACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACT 171998
Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
| || |||| || || ||||| | ||||| || |||||||
Sbjct 171999 ACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCT 172041
>seq130830
Length=505
Score = 105 bits (116), Expect = 8e-18
Identities = 99/125 (79%), Gaps = 1/125 (1%)
Strand=Plus/Plus
Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
|||| ||||| ||||||||||| || || || || ||||| || || ||||||||||||
Sbjct 381 TATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGC 440
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
|| | || | ||||| ||| | |||||||| || |||||||| || || ||||| || |
Sbjct 441 CAAGCGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTG 500
Query 27521 ACCAG 27525
|||||
Sbjct 501 ACCAG 505
>seq34520
Length=2775569
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| |||||||||||| ||||||| ||||| || ||||||||||||||||
Sbjct 505226 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTGGGGTCTTTTGCTTCTATTTTCTGGCTA 505285
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833
|| ||| | || || ||||| || || | || || || || || |||
Sbjct 505286 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 505333
>seq19765
Length=1114994
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| |||||||||||| ||||||| |||||| || ||||||||||||| ||
Sbjct 414357 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTTGGGTCTTTTGCTTCTATTTTCTGGTTA 414416
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833
|| ||| | || || ||||| || || | || || || || || |||
Sbjct 414417 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 414464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569140030383760
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