Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21577 179 4e-40 seq8150 179 4e-40 seq12251 156 5e-33 seq32410 136 4e-27 seq130830 105 8e-18 seq34520 82.4 9e-11 seq19765 82.4 9e-11 >seq21577 Length=2421781 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || |||||||||||| | | Sbjct 24114 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24055 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || |||||||| || ||| Sbjct 24054 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 23995 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || || || | ||||| || Sbjct 23994 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACGCTGTCCGACTACAAC 23935 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| |||||||||| || || Sbjct 23934 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGTCTTCGTGGGGG 23888 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || || || || || ||| | || |||||| | || Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || || || ||||| || |||||||| |||||| Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAAC 24391 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| ||||||| | ||||| Sbjct 24390 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGG 24344 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || || ||||||||| | | Sbjct 25254 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 25195 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| |||||||| || |||||||| || || ||||| || ||| Sbjct 25194 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAG 25135 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| | || |||| || || || | || || || Sbjct 25134 CAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAAC 25075 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| ||| ||||||| | ||||| Sbjct 25074 ATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 25028 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | | Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || |||||||| || |||||||| || |||||||| |||||| Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24223 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || || || | || || || Sbjct 24222 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAAC 24163 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || || | ||||| | ||||| Sbjct 24162 ATCCAGAAGGAATCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGG 24116 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||||||| | | Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || |||||||| || |||||||| || |||||||| |||||| Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24907 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || |||| || || || | ||||| || Sbjct 24906 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 24847 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | ||||| | ||||| Sbjct 24846 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGG 24800 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || || || || ||||||||||| || || || Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || || || ||||| || |||||||| |||||| Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || || || | || |||| || || || | ||||| || Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 24619 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || ||||| ||| ||||||| | ||||| Sbjct 24618 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGGTGG 24572 >seq8150 Length=1005622 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || |||||||||||| | | Sbjct 148976 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 148917 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| |||||||| || |||||||| || |||||||| || ||| Sbjct 148916 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 148857 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 148856 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 148797 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || | || ||| | || || Sbjct 148796 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGCCTTAGGGGAGG 148750 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27426 GCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAA 27485 ||| || |||||||| || | || ||||||||| | | || | ||||| || | || Sbjct 148684 GCTGACTGGCAAGACCATCCCCCTCGAGGTTGAGCCCAGCGACACCATTGAGAACGTCAA 148625 Query 27486 GGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGG 27545 ||| || || ||||||||||| || |||||||| |||||||||||||| || || ||||| Sbjct 148624 GGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGG 148565 Query 27546 TAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCT 27605 |||||| || || |||| || ||||| | ||||| || |||| ||||| ||||| || Sbjct 148564 TAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCT 148505 Query 27606 TCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| |||||||||| || || Sbjct 148504 CCATCTCGTCCTGCGTCTTCGTGGCGG 148478 >seq12251 Length=2530766 Score = 156 bits (172), Expect = 5e-33 Identities = 169/223 (76%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||| ||||||||||| || || || |||||||| || || |||||||| ||| Sbjct 1821340 TATAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGC 1821399 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || | || | ||||| || | ||||| ||||| |||||||| || || ||||| || | Sbjct 1821400 CAAGCGACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTG 1821459 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 |||||||| | | ||||||||||| || || || || |||| ||| || || | |||| Sbjct 1821460 ACCAGCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACT 1821519 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || |||| || || ||||| | ||||| || ||||||| Sbjct 1821520 ACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCT 1821562 >seq32410 Length=743546 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || |||||||||||| || | Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | |||||||| || |||||||| || || ||||| || |||||| Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || || | | ||||| || Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| | ||||| || |||||||| Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCT 172497 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || |||||||||||| || | Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || | |||||||| || || ||||| || |||||| Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || || || | ||||| || Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| | ||||| || ||||||| Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCT 172269 Score = 129 bits (142), Expect = 7e-25 Identities = 163/223 (73%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||| ||||||||||| || || || || ||||| || || |||||||||||| Sbjct 171819 TATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGC 171878 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || | || | ||||| || | ||||| || | |||||||| || || ||||| || | Sbjct 171879 CAAGCGACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTG 171938 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 |||||||| | | || ||||| || || || || || |||| || || | | |||| Sbjct 171939 ACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACT 171998 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || |||| || || ||||| | ||||| || ||||||| Sbjct 171999 ACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCT 172041 >seq130830 Length=505 Score = 105 bits (116), Expect = 8e-18 Identities = 99/125 (79%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||| ||||||||||| || || || || ||||| || || |||||||||||| Sbjct 381 TATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGC 440 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || | || | ||||| ||| | |||||||| || |||||||| || || ||||| || | Sbjct 441 CAAGCGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTG 500 Query 27521 ACCAG 27525 ||||| Sbjct 501 ACCAG 505 >seq34520 Length=2775569 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| |||||||||||| ||||||| ||||| || |||||||||||||||| Sbjct 505226 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTGGGGTCTTTTGCTTCTATTTTCTGGCTA 505285 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | || || ||||| || || | || || || || || ||| Sbjct 505286 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 505333 >seq19765 Length=1114994 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| |||||||||||| ||||||| |||||| || ||||||||||||| || Sbjct 414357 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTTGGGTCTTTTGCTTCTATTTTCTGGTTA 414416 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | || || ||||| || || | || || || || || ||| Sbjct 414417 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 414464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569140030383760