Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq20878 104 2e-17 seq41124 96.9 3e-15 >seq20878 Length=969699 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 3250 TGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGG 3309 ||| ||||||||| ||| || || ||||||||||| || || ||||||||||||||||| Sbjct 551313 TGAAGAGCTCTTCAAAGACGGAGTGAACTGGGGGCGGATCGTCGCTTTCTTTGAGTTTGG 551372 Query 3310 TGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGC 3369 ||| ||||||||||| ||| |||| | | || | |||| || || || ||||| Sbjct 551373 TGGGACCATGTGTGTGGAGAGCTTCAACCGGGAGATGGCGTCCCAGGTAGATAATATTGC 551432 Query 3370 CGCGTGGATGACAGACCAGCTG 3391 |||||||||||| | ||| Sbjct 551433 ACACTGGATGACAGACTACCTG 551454 >seq41124 Length=1142746 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 3251 GATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGT 3310 || |||||||| ||| || || ||||||||||| || | |||||||||||||||||| Sbjct 693501 GAAGAGCTCTTTAAAGACGGAGTGAACTGGGGGCGGATCATCGCTTTCTTTGAGTTTGGT 693442 Query 3311 GGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCC 3370 || ||||||||||| |||||||| | | || | |||| || || || ||||| Sbjct 693441 GGGACCATGTGTGTGGAGAGCGTCAACCGGGAGATGGCGTCCCAGGTAGATAATATTGCA 693382 Query 3371 GCGTGGATGACAGACCAGCTG 3391 |||||||||||| | ||| Sbjct 693381 CACTGGATGACAGACTACCTG 693361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413647490597572