Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq12251 98.7 7e-16 seq32410 96.9 2e-15 >seq12251 Length=2530766 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846 ||||| || ||||| ||||| || ||||| || || || |||| ||||| |||| Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || ||||| |||||| ||||||||||| |||| || Sbjct 1821405 GAC-ACCATTGAGAAC--GTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGAC 1821461 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| |||||||| || ||||| |||| || | |||| |||| || ||| Sbjct 1821462 CAGCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTAC 1821521 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||||||| |||||| ||| |||||| |||| ||||| Sbjct 1821522 AACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGT 1821560 >seq32410 Length=743546 Score = 96.9 bits (106), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 172373 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 172432 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || ||||||||||| |||||| ||| |||||| |||| ||| Sbjct 172433 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGTTG 172492 Query 28003 CGT 28005 ||| Sbjct 172493 CGT 172495 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 171917 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 171976 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || ||||||||||| |||||| ||| |||||| | || || Sbjct 171977 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 172036 Query 28003 CGT 28005 ||| Sbjct 172037 CGT 172039 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 172145 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 172204 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| |||| || ||||||||||| |||||| ||| |||||| | || || Sbjct 172205 GATGGCCGCACACTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 172264 Query 28003 CGT 28005 ||| Sbjct 172265 CGT 172267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355150369714371