Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq12251 98.7 7e-16
seq32410 96.9 2e-15
>seq12251
Length=2530766
Score = 98.7 bits (108), Expect = 7e-16
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846
||||| || ||||| ||||| || ||||| || || || |||| ||||| ||||
Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || | || ||||| |||||| ||||||||||| |||| ||
Sbjct 1821405 GAC-ACCATTGAGAAC--GTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGAC 1821461
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| |||| |||||||| || ||||| |||| || | |||| |||| || |||
Sbjct 1821462 CAGCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTAC 1821521
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005
|||||||| |||||| ||| |||||| |||| |||||
Sbjct 1821522 AACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGT 1821560
>seq32410
Length=743546
Score = 96.9 bits (106), Expect = 2e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||||||||| |||| || ||||| |||| || |||||||| ||||| ||||
Sbjct 172373 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 172432
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| ||||| || ||||||||||| |||||| ||| |||||| |||| |||
Sbjct 172433 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGTTG 172492
Query 28003 CGT 28005
|||
Sbjct 172493 CGT 172495
Score = 87.8 bits (96), Expect = 1e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||||||||| |||| || ||||| |||| || |||||||| ||||| ||||
Sbjct 171917 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 171976
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| ||||| || ||||||||||| |||||| ||| |||||| | || ||
Sbjct 171977 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 172036
Query 28003 CGT 28005
|||
Sbjct 172037 CGT 172039
Score = 82.4 bits (90), Expect = 5e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||||||||| |||| || ||||| |||| || |||||||| ||||| ||||
Sbjct 172145 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 172204
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| |||| || ||||||||||| |||||| ||| |||||| | || ||
Sbjct 172205 GATGGCCGCACACTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 172264
Query 28003 CGT 28005
|||
Sbjct 172265 CGT 172267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355150369714371
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |