Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 185 2e-41
seq8150 185 2e-41
seq32410 150 4e-31
seq12251 145 2e-29
seq130830 91.5 3e-13
>seq21577
Length=2421781
Score = 185 bits (204), Expect = 2e-41
Identities = 174/222 (78%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || || |||||||| || |||||||| || || | || ||
Sbjct 23893 ACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGT 23952
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||||||||||||||||||| |||||||| || || || || |||||||||| ||
Sbjct 23953 GCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCC 24012
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| |||||||| || |||||||| | |||||||| ||
Sbjct 24013 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAG 24072
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || | ||||| ||||| | ||||||
Sbjct 24073 GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 24359 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCC 24418
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| || || || ||||||||||||| |||||||| ||
Sbjct 24419 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCT 24478
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||||| || ||||||||| | ||||| || | |||||| ||
Sbjct 24479 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTT 24538
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| ||||| | ||||||
Sbjct 24539 TTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||||| || || |||||||| ||||| | || || | ||||||
Sbjct 24131 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCC 24190
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| || || || ||||||||||||| |||||||||||
Sbjct 24191 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24250
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||| ||||| || |||||||| | |||||||| || ||||| |||
Sbjct 24251 TGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTC 24310
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| ||||| | ||||||
Sbjct 24311 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || | || || | |||||||
Sbjct 24815 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 24874
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || || || ||||||||||||| |||||||||||
Sbjct 24875 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24934
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||| ||||| || |||||||| | ||||||||||| ||||| |||
Sbjct 24935 TGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 24994
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 24995 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026
Score = 176 bits (194), Expect = 1e-38
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || ||||| || || |||||||| ||||| | || || | |||||||
Sbjct 25043 AGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCT 25102
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||||||||| |||||||| || || || || |||||||| | |||||||||||
Sbjct 25103 TCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 25162
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || |||||| || || |||||||| | ||||||||||| ||||| |||
Sbjct 25163 TGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 25222
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| ||||| | |||||| ||
Sbjct 25223 TTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 25257
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || ||||||||||| |||||||| || || | || || | |||||||
Sbjct 24587 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 24646
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||| ||||| |||||||| | || || ||||||||||||| |||||||| ||
Sbjct 24647 TCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCT 24706
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || ||||||||| ||| ||||| |||||||| ||
Sbjct 24707 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTT 24766
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| ||||| | ||||||
Sbjct 24767 TTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798
>seq8150
Length=1005622
Score = 185 bits (204), Expect = 2e-41
Identities = 170/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||||||||| || |||||||| || || | ||||| | |||||||
Sbjct 148765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 148824
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| |||||||| || || || || |||||||||| |||||||||||
Sbjct 148825 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCT 148884
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || |||||| || || |||||||| | |||||||| || ||||| |||
Sbjct 148885 TGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTC 148944
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| ||||| | |||||| ||
Sbjct 148945 TTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 148979
Score = 170 bits (188), Expect = 4e-37
Identities = 162/206 (79%), Gaps = 1/206 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || || |||||||| || |||||||| || || | |||||
Sbjct 148483 ACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 148542
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||||||||||| || |||||||| || || || ||||||||||||| ||
Sbjct 148543 GCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 148602
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| || ||||| || |||||||| | |||||||||||
Sbjct 148603 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAG 148662
Query 211073 AGTGATCGTCTTTCCCGTGAG-AGTC 211097
| ||| ||||| || || || ||||
Sbjct 148663 GGGGATGGTCTTGCCAGTCAGCAGTC 148688
>seq32410
Length=743546
Score = 150 bits (166), Expect = 4e-31
Identities = 163/215 (76%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || | ||||||||||| |||||||| || || | | || | ||||||
Sbjct 172035 AGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCT 171976
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || ||||| | | || |||||||| |||| ||||| ||||||
Sbjct 171975 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 171916
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079
|||| |||| || ||||| || |||||||| |||| |||||||| || |||||
Sbjct 171915 TGGACCTTTGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCAAGGGTGATG 171859
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || ||||| || || ||||| | ||||||
Sbjct 171858 GTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824
Score = 145 bits (160), Expect = 2e-29
Identities = 162/215 (75%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || | ||||||||||| |||||||| || || | || || | ||||||
Sbjct 172263 AGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATCT 172204
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || ||||| | | || |||||||| |||| ||||| ||||||
Sbjct 172203 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 172144
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079
|||| |||| || ||||| || |||||||| |||| |||||||| || |||||
Sbjct 172143 TGGACCTTTGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCAAGGGTGATG 172087
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || | ||||| || || | ||||||
Sbjct 172086 GTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172052
Score = 132 bits (146), Expect = 1e-25
Identities = 150/200 (75%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
||||||||||| |||||||| || || | | || | |||||||||||||| |||||
Sbjct 172476 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 172417
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
|| ||||| | | || |||||||| |||| ||||| |||||||||||||| ||
Sbjct 172416 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 172357
Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| || || ||||| |||| |||||||| || ||||| ||||| || || |
Sbjct 172356 ACGTTCTCAATTGTGTC---GCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAG 172300
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| || || | ||||||
Sbjct 172299 GTCTTGACGAAGATCTGCAT 172280
>seq12251
Length=2530766
Score = 145 bits (160), Expect = 2e-29
Identities = 153/200 (77%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
||||||||||| |||||||| || || | || || | |||||||||||||| |||||
Sbjct 1821541 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCA 1821482
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
|| || || | | || |||||||| |||| ||||| ||||||||||| ||| ||
Sbjct 1821481 GCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTG 1821422
Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| || |||||||| |||| || ||||| || ||||||||||| || |||||
Sbjct 1821421 ACGTTCTCAATGGTGTC---GCTTGGCTCGACCTCAAGGGTGATCGTCTTGCCAGTGAGG 1821365
Query 211095 GTCTTTACAAACACCTGCAT 211114
|| || ||||| | ||||||
Sbjct 1821364 GTTTTGACAAAGATCTGCAT 1821345
>seq130830
Length=505
Score = 91.5 bits (100), Expect = 3e-13
Identities = 94/122 (77%), Gaps = 6/122 (5%)
Strand=Plus/Minus
Query 210996 TGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
|||||||| |||| ||||| |||||||||||||| || || || || ||||||||
Sbjct 504 TGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTC- 446
Query 211056 GAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112
|||| |||||||| || ||||| ||||| || ||||| || || ||||| | ||||
Sbjct 445 --GCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGC 388
Query 211113 AT 211114
||
Sbjct 387 AT 386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1156713762527145
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