Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq21577 143 6e-29 seq8150 143 6e-29 seq12251 96.9 8e-15 >seq21577 Length=2421781 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||| || || || ||||| || || |||| ||||| |||| || || Sbjct 23893 ACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGT 23952 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 23953 GCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCC 24012 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || |||||||| || || || || | Sbjct 24013 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAG 24072 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| || || Sbjct 24073 GGTGATGGTCTTGCCAGTCAAGGTCTT 24099 Score = 141 bits (156), Expect = 2e-28 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| |||||||| || |||| |||||||| | || || | ||||| Sbjct 25042 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATC 25101 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | |||||| ||||||||||| || || || || || || || || ||||||||||| Sbjct 25102 TTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTC 25161 Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 |||||| ||| || |||||| || |||||||| || || || || | ||||| | Sbjct 25162 TTGGAT-TTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGG 25220 Query 225680 TCTTGCCCGTCA 225691 ||||||| |||| Sbjct 25221 TCTTGCCAGTCA 25232 Score = 134 bits (148), Expect = 3e-26 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| |||||||| || |||| |||||||| | || || | ||||| Sbjct 24131 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCC 24190 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || ||||| |||||||||||| Sbjct 24191 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24250 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || || || |||||||| || || || || | ||||| || Sbjct 24251 TGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 24309 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 24310 CTTGCCAGTCA 24320 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||| ||||| |||| ||||| |||| || ||| | ||||| Sbjct 24586 CAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 24645 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | ||| || || |||||||| | || || ||||| || ||||| |||||||| || Sbjct 24646 TTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATC 24705 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || || |||||||| | |||||| || | ||||| || Sbjct 24706 TTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGT 24765 Query 225681 CTTGCCCGTCAAAGTTTT 225698 || || ||||| || || Sbjct 24766 TTTACCAGTCAAGGTCTT 24783 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || ||||| ||||| || || |||| ||||| |||| || || | ||||| Sbjct 24358 CAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 24417 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || || || ||||| || ||||| |||||||| || Sbjct 24418 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATC 24477 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| |||||| || |||||||| || || || || || ||||| || Sbjct 24478 TTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGT 24537 Query 225681 CTTGCCCGT 225689 || || || Sbjct 24538 TTTTCCAGT 24546 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| || | || ||| | |||||| Sbjct 24815 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 24874 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || ||||| |||||||||||| Sbjct 24875 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24934 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || || || |||||||| || || || || | ||||| || Sbjct 24935 TGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 24993 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 24994 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 >seq8150 Length=1005622 Score = 143 bits (158), Expect = 6e-29 Identities = 148/191 (77%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||||||||| || || |||| ||||| |||| || || | |||||| Sbjct 148765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 148824 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || ||||| |||||||||||| Sbjct 148825 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCT 148884 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || |||||| || |||||||| || || || || | ||||| || Sbjct 148885 TGGAT-TTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 148943 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 148944 CTTGCCAGTCA 148954 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||| || ||||| ||||| || || |||| ||||| || | | || Sbjct 148483 ACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 148542 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 148543 GCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 148602 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || || |||||||| || || || || | Sbjct 148603 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAG 148662 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 | ||| |||||||| |||| Sbjct 148663 GGGGATGGTCTTGCCAGTCA 148682 >seq12251 Length=2530766 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || | ||||| ||||| |||| ||||| || | || || | ||||| Sbjct 1821557 CAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 1821498 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || ||||| || || | | || ||||| || ||||| ||||| ||||| Sbjct 1821497 TTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 1821438 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| ||| || || |||||||| | || || || | |||||||| Sbjct 1821437 CTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGT 1821378 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| || | ||||| Sbjct 1821377 CTTGCCAGTGAGGGTTTT 1821360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190022750496062