Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq74633 118 9e-22
seq39920 114 1e-20
seq29358 105 5e-18
>seq74633
Length=229
Score = 118 bits (130), Expect = 9e-22
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 29753 TAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGG 29812
|||||||||||||| || |||||||| || || || || || || | |||||| |||||
Sbjct 1 TAGCTGGCGATGTTGAAAGGCACCCCCAGACCGATATCACCAGAGCGCTGGTACAGCTGA 60
Query 29813 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCC 29872
||||| | ||| ||||| ||||||||||||||||| ||||||||||| || | |||
Sbjct 61 CACGACAACTCACCGTCTGACACGTAAAACTGACACAACGCATGGCACGGGGGTAACGCC 120
Query 29873 ATGAGACCCAAGTCT 29887
|| ||| || ||||
Sbjct 121 ATCAGAGGCAGGTCT 135
>seq39920
Length=384501
Score = 114 bits (126), Expect = 1e-20
Identities = 115/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075
|| ||||||||||| || || |||||||| ||||| ||||| || |||| | ||| ||
Sbjct 182345 AAGTGCCTCCACTGAAAGCCATACACCGGACCCAGATCTCCTTCCTCCCGATCGCT-AAA 182287
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||||| |||| ||| || ||||| ||||| || |||||||| | || ||||||||
Sbjct 182286 GCCGCTCTTATCCAGAAACTCCCTGGAGCCGTTAGCATCCCAGATTCTCACACCCTTCTC 182227
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| |||||||||| || || || ||
Sbjct 182226 TGACAGCTCTTTGGCATTGGTTGAACC 182200
>seq29358
Length=42689
Score = 105 bits (116), Expect = 5e-18
Identities = 117/152 (77%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075
|| ||||||||||| || || ||||| || ||||| ||||| || |||| | ||| ||
Sbjct 19120 AAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATCTCCTTCCTCCCGATCGCT-AAA 19062
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| |||| |||| ||| || ||||| ||||| || |||||||| | || ||||||||
Sbjct 19061 GCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCATCCCAGATTCTCACACCCTTCTC 19002
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167
|| |||||||||| || || || || ||||
Sbjct 19001 TGACAGCTCTTTGGCATTGGTTGAACC-CTGA 18971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405350524934278
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |