Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq74633 118 9e-22 seq39920 114 1e-20 seq29358 105 5e-18 >seq74633 Length=229 Score = 118 bits (130), Expect = 9e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29753 TAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGG 29812 |||||||||||||| || |||||||| || || || || || || | |||||| ||||| Sbjct 1 TAGCTGGCGATGTTGAAAGGCACCCCCAGACCGATATCACCAGAGCGCTGGTACAGCTGA 60 Query 29813 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCC 29872 ||||| | ||| ||||| ||||||||||||||||| ||||||||||| || | ||| Sbjct 61 CACGACAACTCACCGTCTGACACGTAAAACTGACACAACGCATGGCACGGGGGTAACGCC 120 Query 29873 ATGAGACCCAAGTCT 29887 || ||| || |||| Sbjct 121 ATCAGAGGCAGGTCT 135 >seq39920 Length=384501 Score = 114 bits (126), Expect = 1e-20 Identities = 115/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075 || ||||||||||| || || |||||||| ||||| ||||| || |||| | ||| || Sbjct 182345 AAGTGCCTCCACTGAAAGCCATACACCGGACCCAGATCTCCTTCCTCCCGATCGCT-AAA 182287 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||||| |||| ||| || ||||| ||||| || |||||||| | || |||||||| Sbjct 182286 GCCGCTCTTATCCAGAAACTCCCTGGAGCCGTTAGCATCCCAGATTCTCACACCCTTCTC 182227 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||||| || || || || Sbjct 182226 TGACAGCTCTTTGGCATTGGTTGAACC 182200 >seq29358 Length=42689 Score = 105 bits (116), Expect = 5e-18 Identities = 117/152 (77%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075 || ||||||||||| || || ||||| || ||||| ||||| || |||| | ||| || Sbjct 19120 AAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATCTCCTTCCTCCCGATCGCT-AAA 19062 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||| |||| ||| || ||||| ||||| || |||||||| | || |||||||| Sbjct 19061 GCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCATCCCAGATTCTCACACCCTTCTC 19002 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 || |||||||||| || || || || |||| Sbjct 19001 TGACAGCTCTTTGGCATTGGTTGAACC-CTGA 18971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405350524934278