Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq36865 102 7e-17 seq34520 82.4 7e-11 >seq36865 Length=2971667 Score = 102 bits (112), Expect = 7e-17 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| | |||||||| || ||||| || || | || | ||||||||| | ||||| | Sbjct 1669567 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 1669509 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | ||| | || || |||||||| ||||| ||||| |||||||| || || |||| Sbjct 1669508 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 1669449 Query 4687 ACGCTACTAATCG 4699 | ||||||||||| Sbjct 1669448 ATGCTACTAATCG 1669436 >seq34520 Length=2775569 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || || ||||| || | || || ||||||||||| || || ||||| || Sbjct 504778 GGATCTTTGATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATG 504719 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| || ||||| ||||| | ||||| || ||||| ||||| | | ||||| Sbjct 504718 GCAATCTGGAAACCGTAGAAGCAGCGGGCTTCAGTCACTTGGACTTCCTGAGTAAATC 504661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426195134204609