Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq44218 109 8e-19
seq14570 109 8e-19
seq159452 105 9e-18
seq15552 105 9e-18
>seq44218
Length=785574
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||| ||||| ||||||||||| ||||| || ||| ||| ||||||| | || |||
Sbjct 784491 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCGCTGT 784550
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
|| || || || |||||||||||||| || || || || | ||| ||| ||||||| ||
Sbjct 784551 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 784610
Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150
|| || || || || | | |||| ||||
Sbjct 784611 TCCAGGTACATAGCAAAAGCTCCTGGTC 784638
>seq14570
Length=4705
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||| ||||| ||||||||||| ||||| || ||| ||| ||||||| | || |||
Sbjct 625 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCGCTGT 684
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
|| || || || |||||||||||||| || || || || | ||| ||| ||||||| ||
Sbjct 685 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 744
Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150
|| || || || || | | |||| ||||
Sbjct 745 TCCAGGTACATAGCAAAAGCTCCTGGTC 772
>seq159452
Length=1242
Score = 105 bits (116), Expect = 9e-18
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902
|||| |||| || ||||| |||||||| ||||||||| ||| | || || || || |
Sbjct 584 CCAGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGT 525
Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962
| || || | ||||| || || || ||||| |||||||| || || ||||| |||| |
Sbjct 524 GGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGA 465
Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGTTTT 76993
|||||||||||| || ||||| | ||| ||
Sbjct 464 TGGTCTTTTGAGAGATCTCCCACACAGTCTT 434
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||| |||||||||| ||||| || ||||| || || || || ||||| || | ||
Sbjct 141 TGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGATTGAC 82
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238
||||||||||||| || |||||||| || ||||| |||||||| |||| ||
Sbjct 81 TCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCA 30
>seq15552
Length=1137653
Score = 105 bits (116), Expect = 9e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||| ||||| ||||||||||| ||||| || || ||| ||||||| | ||| |||
Sbjct 1132508 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 1132449
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
|| || || || || ||||||||||| || || || || | ||| ||| ||||||| ||
Sbjct 1132448 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 1132389
Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150
|| || || || || | | |||| ||||
Sbjct 1132388 TCCAGGTACATGGCAAAAGCTCCTGGTC 1132361
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || ||||| |||||||| ||||||||| ||| | || || || || || || |
Sbjct 1137076 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1137017
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| || || || ||||| |||||||| || || ||||| |||| |||||||
Sbjct 1137016 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1136957
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017
|||| | || ||||| | || || | | || || | ||||||||
Sbjct 1136956 TTTGCGAGATCTCCCACACGGTCTTATACAGTTCCTTCAGGTCATCTGG 1136908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693243226738720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |