Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq38558 161 1e-34 seq43433 152 7e-32 seq33531 120 4e-22 seq160517 118 2e-21 seq32347 118 2e-21 seq35465 113 6e-20 seq41984 111 2e-19 >seq38558 Length=2776019 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| ||| | || ||||| | || || |||||||| || ||||||||| | ||||| Sbjct 2249706 TTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTCGGTTTCCAGTACTCAGGGGAA 2249765 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || |||| || |||||||||||| | || || |||| || | ||| || Sbjct 2249766 CAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTC 2249825 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||||||||| | |||||| || |||| || || || || ||||||||| Sbjct 2249826 TCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAGCTCCACA 2249885 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || | |||||| | | ||||| ||||| ||||||||||||||| Sbjct 2249886 GCATCCACATGTCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 2249939 Score = 122 bits (134), Expect = 1e-22 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| || |||||||| ||||| ||||||| ||| || ||||| Sbjct 2250840 TCACCAATAAGGATGAGCCGTGTGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGC 2250899 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | || || | || ||||| | ||||||||| | |||||||| || || |||||| Sbjct 2250900 TCCTTCTTTAGTATTTCACACACTCGGTTGTGTTCACGCAGCCAGATGGTAGCATACATC 2250959 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || ||||| ||||| ||||| ||||| || || | || || || Sbjct 2250960 ATGAGTCCTGGAACCAGTCCAAAGGCCTCGTGACCCACGGCAAAGCGACGAGACTCAGGT 2251019 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||||| ||| ||||| || || || || |||| | || ||||| | ||| Sbjct 2251020 ACATGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCA 2251079 Query 9472 CCGTC 9476 || || Sbjct 2251080 CCATC 2251084 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 2251993 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGTGGGACAGGAGGCAGTGTGCGAGTG 2252052 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| ||| Sbjct 2252053 TAGTAGGAGAGATTAGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATAAA 2252112 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 || ||||| ||||||| || || Sbjct 2252113 GGTGGGCTATCAATCAGATGGG 2252134 >seq43433 Length=1517348 Score = 152 bits (168), Expect = 7e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| ||| | || ||||| | || || |||||||| || ||||||||| | ||||| Sbjct 1336111 TTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCGGGGGAA 1336052 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || |||| || |||||||||||| | || || |||| || | ||| || Sbjct 1336051 CAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTC 1335992 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||||||||| | |||||| || |||| | || | || ||||||||| Sbjct 1335991 TCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGCTCCACA 1335932 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || || ||||| | | ||||| ||||| ||||||||||||||| Sbjct 1335931 GCATCCACATCCCCGTACATCTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1335878 Score = 131 bits (144), Expect = 2e-25 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| || | |||||| ||||| ||||||| ||| || ||||| Sbjct 1334972 TCACCAATAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGC 1334913 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || || || | ||| ||||| | ||||||||| | |||||||| ||||| |||||| Sbjct 1334912 TCCTGCTTTAGTATATCACACACTCGGTTGTGTTCACGCAGCCAGATGGTGGCATACATC 1334853 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || ||||| ||||| || || ||||| || || | || | || || Sbjct 1334852 ATGAGTCCGGGAACCAGTCCAAAGGCTTCGTGACCAACGGCAAAGCGACGGGACTCAGGT 1334793 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||||| ||| ||||| || || || || |||| | || ||||| | ||| Sbjct 1334792 ACATGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCA 1334733 Query 9472 CCGTC 9476 || || Sbjct 1334732 CCATC 1334728 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 1333808 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGCGGGACAGGAGGCAGCGTGCGAGTG 1333749 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| |||| Sbjct 1333748 TAGTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATATA 1333689 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 |||||||| ||||||| || || Sbjct 1333688 GGAGGGCTATCAATCAGATGGG 1333667 >seq33531 Length=3659319 Score = 120 bits (132), Expect = 4e-22 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||| ||||| | |||||||| ||||| ||||| || | ||| ||||||||| Sbjct 13640 CCTATAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCT 13581 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||||| | ||| ||||| | |||||| || | ||||| | ||||||||||| || Sbjct 13580 TGTTTCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTG 13521 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GGCAC 9413 || || || | ||||||||| | ||||| || | ||||| || || | | || || Sbjct 13520 AGACCCGGCAGCAGGCCAAACACTTCTTGCCCAATGGCCAGCTGC-TGCTCCGGTGGGAC 13462 Query 9414 TTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACC 9473 || || ||| |||| | ||| | | ||| || | |||||||||||| ||||| Sbjct 13461 AGACGGCGGGTAGCTCATTTTGACCGGTGCATCTAGCACTGTGGGGGGATACATCTCACC 13402 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || ||||||||||||||| | |||||||| || || ||||||||||| Sbjct 18206 CCCCCAAATGTACTGGGCTTCCAGTACTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 18147 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || || ||||||| || | ||||| ||||| || || || | || Sbjct 18146 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCACCAAATATCGCACCAGATCGT 18087 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | || || | ||| | | | ||| | ||||| ||| || | || || || || || Sbjct 18086 GTATTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATCACCATACAGTTCC 18027 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||||| ||| ||||| | ||||||||| Sbjct 18026 TCTAGTTCTTTAGCCATCTCTTCTTCTCCTGT 17995 >seq160517 Length=1345 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || ||||| ||| ||||||| | || || || || | || Sbjct 427 AATCCCACTTTCCCACCAAATGTGCTCGGCATCCAGTATTCAGGAGAACAAATAGCATTT 486 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||||||||||||||| ||| | || || |||| ||| | || |||| || || | Sbjct 487 CCCATGAGGCCTTTGAGAGAGTAGGGGGCTCCCATCTCTACCATAGTCTCCCCAAACACA 546 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 |||||||| | ||| || |||| |||||| || | |||||||| || || || | || Sbjct 547 GCGTTGGGTCTGGGTTTCTCCA-CAAGAAGGCCAGGATACAGCTCAACCGCGTCTATGTG 605 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTA 8590 ||||| || | | | |||||| || | |||||| |||||||||||| Sbjct 606 ACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 654 >seq32347 Length=2478086 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || ||||| ||| ||||||| | || || || || | || Sbjct 1845211 AATCCCACTTTCCCACCAAATGTGCTCGGCATCCAGTATTCAGGAGAACAAATAGCATTT 1845152 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||||||||||||||| ||| | || || |||| ||| | || |||| || || | Sbjct 1845151 CCCATGAGGCCTTTGAGAGAGTAGGGGGCTCCCATCTCTACCATAGTCTCCCCAAACACA 1845092 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCCACAGCCTCGACGTC 8541 |||||||| | ||| || ||||| ||||| || | |||||||| || || || | || Sbjct 1845091 GCGTTGGGTCTGGGTTTCTCCAC-AAGAAGGCCAGGATACAGCTCAACCGCGTCTATGTG 1845033 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTA 8590 ||||| || | | | |||||| || | |||||| |||||||||||| Sbjct 1845032 ACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 1844984 >seq35465 Length=3269434 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || ||||| ||| ||||||| | || | || || | || Sbjct 2903268 AATCCCACTTTCCCACCAAATGTGCTAGGCATCCAGTATTCAGGAGCACAAATAGCATTT 2903209 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||||||||||||||| ||| | || || |||| ||| | || |||| || || | Sbjct 2903208 CCCATGAGGCCTTTGAGAGAGTAGGGCGCTCCCATCTCCACCATAGTCTCCCCAAACACA 2903149 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCCACAGCCTCGACGTC 8541 | |||| | ||||| || ||||| ||||| || || |||||||| || || || | || Sbjct 2903148 GAGTTGAGCCGGGGTTTCTCCAC-AAGAAGGCCAGTATACAGCTCAACCGCATCTATGTG 2903090 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTA 8590 ||||| || | | | |||||| || | |||||| |||||||||||| Sbjct 2903089 ACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 2903041 >seq41984 Length=1574288 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||| ||||| | |||||||| ||||| ||||| || | ||| |||||||||| Sbjct 1305159 CCTATAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTTGGATGTTCT 1305100 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||||| | ||| ||||| | |||||| || | ||||| | |||||||||| || Sbjct 1305099 TGTTTCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACAAACTG 1305040 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || || || | ||| ||||| | ||||| || | ||||| ||| | | || || Sbjct 1305039 AGACCCGGCAGCAGTCCAAACACTTCTTGCCCAATGGCCAGCTGCAGCTCTGGCGGGACA 1304980 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACC 9473 || || ||| |||| | ||| | | ||| || | |||||| || || ||||| Sbjct 1304979 GACGGTGGGTAGTTCATTTTGACCGGTGCATCTAGCACTGTGGGGGGGTATATCTCACC 1304921 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || ||||||||||||||| | |||||||| || || ||||||||||| Sbjct 1320259 CCCCCAAATGTACTGGGCTTCCAGTACTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 1320200 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || || ||||||| || | ||||| || || || || || || || Sbjct 1320199 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCGCCAAATATCGCACCAGGTCGT 1320140 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | ||| || | ||| | | | ||| | ||||| ||| || | | || || || | Sbjct 1320139 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATGACCATACAGTTTC 1320080 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||||| ||| ||||| ||||||||||| Sbjct 1320079 TCTAGTTCTTTAGCCATCTCTTTTTCTCCTGT 1320048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715405652313920