Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 156 1e-32
seq32410 147 5e-30
seq12251 143 6e-29
seq8150 134 3e-26
seq130830 87.8 4e-12
>seq21577
Length=2421781
Score = 156 bits (172), Expect = 1e-32
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || | || || ||||| ||||| || ||||||||| |||
Sbjct 24795 CAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGTGAC 24736
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||||||||| ||||| || || || ||||| || ||||| ||||||||
Sbjct 24735 ACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAG 24676
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| |||||| | ||||||||| | ||||| |||| || ||| ||
Sbjct 24675 CGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATC 24616
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || ||||| |||||||| || | || |||
Sbjct 24615 CAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGA 24577
Score = 145 bits (160), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| || || || || || || || |||||||||||||| || || |||
Sbjct 25023 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGCG 24966
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| |||||||||||| || || || ||||| ||||| || ||||| |||||||
Sbjct 24965 ACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAGC 24906
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| ||||| || ||||| ||||||||| | ||||| | || || |||
Sbjct 24905 AGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACA 24846
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || || || ||
Sbjct 24845 TCCAGAAGGAGTCCACCCTCCACCTGGT 24818
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || || || || || |||||||||||||| | ||| || |
Sbjct 25251 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 25194
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || ||| || || || ||||| ||||| |||||||| || ||||
Sbjct 25193 ACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAGC 25134
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || |||||||| || || ||| | ||||||||| | || || | ||||| |||
Sbjct 25133 AGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAACA 25074
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || ||||| || || |||||||| || | || |||
Sbjct 25073 TCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGA 25033
Score = 140 bits (154), Expect = 8e-28
Identities = 157/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || || || || || || |||||||| ||||| || || |||
Sbjct 24339 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 24282
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| |||||||||||| || || || ||||| ||||| || ||||| |||||||
Sbjct 24281 ACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAGC 24222
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || |||||||| || || ||||| || |||||| | || || | ||||| |||
Sbjct 24221 AGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAACA 24162
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || || || || ||
Sbjct 24161 TCCAGAAGGAATCCACCCTCCACCTGGT 24134
>seq32410
Length=743546
Score = 147 bits (162), Expect = 5e-30
Identities = 166/221 (75%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || || || ||||| ||||| || || || |||||||| ||||| || ||||
Sbjct 171827 CAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 171883
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||| ||||||||||| |||| | |||||||||||||| || || || ||||||
Sbjct 171884 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 171943
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | | ||||| ||||| |||||||| |||||||| | || | | || || |||
Sbjct 171944 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172003
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| ||||| || || |||||||||| || | |||||
Sbjct 172004 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAG 172044
Score = 147 bits (162), Expect = 5e-30
Identities = 166/221 (75%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || ||||| || || | ||||| || || |||||||| ||||| || ||||
Sbjct 172055 CAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 172111
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||| ||||||||||| |||| | |||||||||||||| || || || ||||||
Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | | ||||| ||||| |||||||| |||||||| | || || | || || |||
Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| ||||| || || |||||||||| || | |||||
Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAG 172272
Score = 138 bits (152), Expect = 3e-27
Identities = 164/221 (74%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || ||||| || || | ||||| || || |||||||| ||||| || ||||
Sbjct 172283 CAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 172339
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| || ||||||||||| ||||| |||||||||||||| || || || ||||||
Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | | ||||| ||||| |||||||| |||||||| | || | | || || |||
Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| ||||| || || ||||||| || ||| | |||||
Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAG 172500
>seq12251
Length=2530766
Score = 143 bits (158), Expect = 6e-29
Identities = 165/221 (75%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || || || ||||| ||||| || || ||||||||||| ||||| || ||||
Sbjct 1821348 CAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC--- 1821404
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||| ||||||||||| ||| || |||||||||||||| || || || ||||||
Sbjct 1821405 GACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1821464
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | | || || || || |||||||| |||||||| | || || | || || |||
Sbjct 1821465 CAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 1821524
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| ||||| || || ||||||| || || | |||||
Sbjct 1821525 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAG 1821565
>seq8150
Length=1005622
Score = 134 bits (148), Expect = 3e-26
Identities = 145/190 (76%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCA 177999
|| || || || || ||| |||||||||| || || ||| ||||||| ||||||||||
Sbjct 148683 CTGACTGGCAAGACCATCCCCCTCGAGGTTGA--GCCCAGCGACACCATTGAGAACGTCA 148626
Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059
| ||||| |||||||| ||||| || ||||| |||||||| || || |||||||| |
Sbjct 148625 AGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTG 148566
Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119
| || ||||| ||||||||| | || || | || || ||| |||| || || || || |
Sbjct 148565 GTAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCC 148506
Query 178120 TGCATCTTGT 178129
| ||||| ||
Sbjct 148505 TCCATCTCGT 148496
>seq130830
Length=505
Score = 87.8 bits (96), Expect = 4e-12
Identities = 92/120 (77%), Gaps = 6/120 (5%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || || || ||||| ||||| || || || |||||||| ||||| || ||||
Sbjct 389 CAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 445
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||| ||||| ||||| ||||| |||||||||||||| || || || ||||||
Sbjct 446 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1201199191670562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |