Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 140 3e-28
seq8150 138 1e-27
seq32410 122 8e-23
seq12251 120 3e-22
>seq21577
Length=2421781
Score = 140 bits (154), Expect = 3e-28
Identities = 164/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||||| || || ||| ||||||||| ||||| ||||| || || |||||
Sbjct 24809 AGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGT 24868
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||||||||| || ||||| ||||| ||||| | |||| || |||
Sbjct 24869 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 24928
Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||| | || |||| |||| ||| | | |||||||| | ||| ||||| | ||
Sbjct 24929 TTGT-CTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGT 24987
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 24988 GATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | || |||||||| ||| ||||||||| ||||| ||||||||
Sbjct 23887 GCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 23946
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| ||||| ||||| ||||| || || | ||
Sbjct 23947 CAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 24006
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| || ||||||||| ||| || ||||| | | |||||||| | ||| ||
Sbjct 24007 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAAC 24066
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || |||| ||||| || || ||||||||
Sbjct 24067 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114
Score = 132 bits (146), Expect = 4e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||||||||| ||||| |||||||| ||||||||
Sbjct 24353 AGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 24412
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| ||||| ||||| ||||| | |||| || |||
Sbjct 24413 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 24472
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| || ||| || ||||| | | ||||| || | ||| || |||| ||
Sbjct 24473 TTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTG 24532
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || || |||||||| || || ||||||||
Sbjct 24533 ATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||||| || || ||| |||||||| ||||| || || || || |||||
Sbjct 24125 AGACGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGT 24184
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| ||||| ||||| ||||| | |||| || |||
Sbjct 24185 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 24244
Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||| | || |||| |||| ||| | | |||||||| | ||| ||||| | ||
Sbjct 24245 TTGT-CTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGT 24303
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| || || ||||||||
Sbjct 24304 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342
Score = 111 bits (122), Expect = 1e-19
Identities = 159/222 (72%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||| ||||| ||||| |||||||| || |||||
Sbjct 24581 AGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGT 24640
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || | ||| ||||||||||| |||| ||||| ||||| | |||| || |||
Sbjct 24641 CCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCC 24700
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820
|| || ||| || ||| |||| | || ||||| || | |||||||| |
Sbjct 24701 TTATCTTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAG 24756
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || |||||||| |||| ||||| || || ||||||||
Sbjct 24757 AGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798
Score = 111 bits (122), Expect = 1e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| |||||||| ||||| || || || || |||||
Sbjct 25037 AGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGT 25096
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || | ||||||||| ||||| ||||| ||||| || || | || | || |||
Sbjct 25097 CCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCC 25156
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| |||||| |||| | | |||||||| | ||| ||||| | ||
Sbjct 25157 TTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTG 25216
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||||||||| || || |||||||| ||
Sbjct 25217 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 25257
>seq8150
Length=1005622
Score = 138 bits (152), Expect = 1e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| || || ||| ||||||||| ||||| |||||||| ||||||||
Sbjct 148759 AGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 148818
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| ||||| ||||| || || | |||| || |||
Sbjct 148819 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCC 148878
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| |||||| |||| | | |||||||| | ||| ||||| | ||
Sbjct 148879 TTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTG 148938
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || ||||||||||| || || |||||||| ||
Sbjct 148939 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 148979
Score = 120 bits (132), Expect = 3e-22
Identities = 155/212 (73%), Gaps = 8/212 (4%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | || ||||| || ||| ||||||||| ||||| ||||| ||
Sbjct 148477 GCCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 148536
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || |||||||| || ||||| ||||| ||||| ||||| | ||
Sbjct 148537 GAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 148596
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACT 41810
|| || ||||||||| ||| || ||| |||| | || |||||||| | ||
Sbjct 148597 AATGCCTTCCTTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGCT 148652
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGC 41842
| ||||| | | || || || || ||||||
Sbjct 148653 CAACCTCGAGGGGGATGGTCTTGCCAGTCAGC 148684
>seq32410
Length=743546
Score = 122 bits (134), Expect = 8e-23
Identities = 162/223 (73%), Gaps = 8/223 (4%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| ||||||||||||| ||| ||| ||||| ||||| ||||| || | |||||
Sbjct 172497 AGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGG 172438
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||| |||||||| || |||| | ||| ||||| | ||||| || ||
Sbjct 172437 CCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCT 172378
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820
|||||| ||| || ||| |||| | || |||||||| | ||| ||||| |
Sbjct 172377 TTGTCCTGGATCTTAGCCTT----GACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAG 172322
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || || |||| ||||| ||||| |||||||||
Sbjct 172321 GGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 172279
>seq12251
Length=2530766
Score = 120 bits (132), Expect = 3e-22
Identities = 161/222 (73%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||||||||| ||| ||| ||||| ||||| ||||| || || |||||
Sbjct 1821562 AGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGA 1821503
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||| ||||| || || |||| | ||| ||||| | ||||| || ||
Sbjct 1821502 CCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCT 1821443
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820
|||||| ||||||| ||| |||| | || |||||||| | ||| ||||| |
Sbjct 1821442 TTGTCCTGGATTTTTGCCTT----GACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAG 1821387
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || || || || || || || || ||||||||
Sbjct 1821386 GGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461355277067600
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