Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1721 168 7e-37 seq210 136 4e-27 seq1579 105 7e-18 >seq1721 Length=144067 Score = 168 bits (186), Expect = 7e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| ||||| ||||| ||||||||| |||| ||||| | Sbjct 117924 AAACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCC 117983 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | |||||| ||||| | ||||| || ||||| ||| | || Sbjct 117984 CAGTGACACCATCGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGA 118043 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | | |||| ||| ||||| |||||||| || | ||||||||| |||||| Sbjct 118044 CCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 118103 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || || |||| |||||||||| Sbjct 118104 CAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGG 118154 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| ||| Sbjct 118156 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 118215 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | |||||| Sbjct 118216 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAG 118275 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 118276 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTACAAC 118335 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || |||| || || || ||| |||| |||||||||| Sbjct 118336 ATCCAAAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGGGGCGG 118382 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || ||| | Sbjct 118384 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGAGCCCAGC 118443 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || || || ||| | |||||| Sbjct 118444 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCTGACCAG 118503 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 118504 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTACAAC 118563 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || || |||| ||||||| || Sbjct 118564 ATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGTCTGAGGGGTGG 118610 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| ||| | |||||||| | | |||| ||| ||||| |||||||| Sbjct 108990 GACAAGGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAG 109049 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| |||||||||||||||||||||| |||| || || || ||| || Sbjct 109050 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACACTCCACCTTGTGCTG 109109 Query 40903 CGCTTGAGGGGCGG 40916 || ||||||| || Sbjct 109110 CGTCTGAGGGGTGG 109123 >seq210 Length=679747 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| | || || || ||| | Sbjct 555761 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACACTGGAGGTGGAGCCCAGC 555820 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| | ||||| | ||||||||||| ||||| | ||||| Sbjct 555821 GACACTATCGAGAACG-TCAAAGCTAAAATCCAGGACAAAGAGGGGATCCCTCCTGACCA 555879 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | ||||| ||| |||||||| Sbjct 555880 GCAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAA 555939 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || || || ||| |||| ||||||| ||| Sbjct 555940 CATCCAGAAAGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGAGGC 555988 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || | || || || ||||||||| | || || || || Sbjct 555530 AAGATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCC 555589 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | | || | ||| || | ||||||||||| ||||| | ||| Sbjct 555590 AGCGACACCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGGATCCCTCCTGAC 555649 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || || | || || || |||||||| || | ||||||||| |||||| Sbjct 555650 CAGCAGAGGCTGATATTTGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 555709 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| || ||||| || |||| | ||||| ||| Sbjct 555710 AACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTTAGGGGAGGC 555760 >seq1579 Length=169011 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| || || || || || ||||| || |||||||| || |||| ||| Sbjct 257 GAGCCGCTGCTGAAGGATAATCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 198 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| ||||||||||| | |||||||| Sbjct 197 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCAGAGGAGGT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515181730683680