Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq755 499 4e-136 seq1980 95.1 2e-14 >seq755 Length=318311 Score = 499 bits (552), Expect = 4e-136 Identities = 1293/1963 (66%), Gaps = 27/1963 (1%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || ||||| | ||||| || | || | || || || ||||| Sbjct 109820 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 109879 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || || || |||| || || || ||||| || || ||||| || | || Sbjct 109880 ACGATCTGAAACTCGCCGGACAGAACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 109939 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 109940 ATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 109999 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | |||| | | ||| || || || || | | ||| | ||| || Sbjct 110000 AGGCTGTTCCTCACGCCGTTTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 110059 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 || | ||| | | ||| || || || || || || ||| | Sbjct 110060 TCGGTCGGCGTCTTCTCCCACATGTCG-------TACTGCAGGATGCCCTTGCTGACTGG 110112 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 || || | || || || || || || || | || || | || |||||||| | Sbjct 110113 GGAGCCCTCGTACGTCTCGTAGGGGCCGAACTCGGCTGCCAGCTCGCAGCTCGCCTCCAG 110172 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 ||| |||| || ||||| || ||||| | | || || || || || ||||| || Sbjct 110173 AGCAGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTC 110232 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| || | | | ||| || || ||||| ||||| ||||| || || || ||||| || Sbjct 110233 AAACGGGTGACGCATGAGGATGAAGGCGTCTGCTAAACCTTGCACTCCGATTCCGATCGG 110292 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | ||| || || | |||||||| || | || || || || || || ||||| Sbjct 110293 CCTGTGGCGCTTGTTGGAATTCTCAGCTTCAGGCACTGGGTAGTAGTTGATGTCGATAAT 110352 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCG 62917 || || || ||| |||| ||||||||| |||| | |||||| ||| ||||| Sbjct 110353 CTTGTTCAGGTTTTTGACGATTACTTTGGTGACATACGCCAGTTTTTTAAAGTCAAAAGT 110412 Query 62918 CCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 || || | || ||||||| | || | || ||||||||||| || |||||||| Sbjct 110413 CCGCTCCGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGACCGCTACCTC 110472 Query 62975 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 63034 | | | |||| | || || ||||| || || || |||||||| || || | Sbjct 110473 GTCATGGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTGCCCAG 110532 Query 63035 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63094 ||| || || || ||||| |||| || || || || || || ||| | || ||||| || Sbjct 110533 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCCGT 110592 Query 63095 TTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGT 63153 || |||| || || || || || | ||| | | || ||||||| | | | ||| Sbjct 110593 CTCCGTCTGCGACTCGATGATGGCGTACCACAGCTGCT-GAGCCTTCACCACACGCTTGG 110651 Query 63154 ATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213 |||| ||| | || || || || | || ||||| || ||||| | || Sbjct 110652 CCCTCCCTTCCTTCTCATACCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGT 110711 Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 ||| || |||||| | | |||||||||| ||||| || || || ||| | | Sbjct 110712 CCAGTCCAGGACAGGCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCT 110771 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 |||| || ||||| || |||||||| || || ||| || ||||| | || || ||||| Sbjct 110772 TCATGAACAGATCGGGGATCCAAAGGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCC 110830 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 |||||||| ||||| || || |||||||| | | | ||| | |||||||| |||||| Sbjct 110831 TTTCCTGTGTTCTTCTTCAGCTCGAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAAG 110890 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | |||| || | ||||| || ||||| || | ||| | || ||||| Sbjct 110891 TACATGGCGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGCGCCGTGTTG 110950 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || |||||||||| ||| || | | ||||| || | ||||||||||| ||||| ||| Sbjct 110951 TTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCATTGGTACCAGAGATGTAG 111010 Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 | ||| ||| | || || | | | ||| || || || ||| || ||||| Sbjct 111011 CTTCCTGTGGATCTGATGCAGCTGACCGCCACACCGATGCCTCCAGCCGACTTGGAGATG 111070 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | || || | || | ||||||||||||||||| ||||| || || ||||| || Sbjct 111071 AGGGCACACTGCTTCAGAGTGTCATAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 111130 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 || || ||||| |||| || | | | ||||| || || || | || || || ||| Sbjct 111131 AGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCAGCGTTGAAGAGAGTCGGGGAGGCG 111190 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63752 || || ||||| || || || || || ||||| ||||| || |||| || || ||| | Sbjct 111191 TGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCATCGATGTCCGTT 111250 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 | || |||||||| | || | ||| | ||||||||| || | || | | |||| | Sbjct 111251 TTGTGGATTCCTACGGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCG 111310 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 || || ||||||| ||||| |||| ||| || || || || ||||||| || || Sbjct 111311 TTGATCTTCAACAGATAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA 111370 Query 63873 TCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATG 63932 |||| ||| | || || |||| ||||| || || | | ||| || || | Sbjct 111371 TCTCTGTCGAAGATTATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACAATGTCGAGC 111430 Query 63933 GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGTTGAATA 63990 || |||| || || || || || | | || | || || || |||||| | | Sbjct 111431 GTCTCCTTTGAGATCATGGGGGA--GTGGCGTTTGTTCAAGGGGTTGACGTAGTTGTACA 111488 Query 63991 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050 |||||||| || || || || | ||| || || |||||||| || || || | || | Sbjct 111489 GGTCCTCCATGACGTCGCTGAACACTTTCTTGGTCTCCTTGTGCAGGTTAGAGACAGCGA 111548 Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 64110 | | || || || ||||| || || || |||| || || |||||| || || || | Sbjct 111549 TCCGAGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTTGTGAGAGTGGCAGCGATCTCTG 111608 Query 64111 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 | |||| ||||| | || || || || ||||| | || | || || || ||||||| Sbjct 111609 CAGCCAACGTGTCGAGCTCCACAGTGGTGACTCCGCTGTACAAACCCTGGATCACCTTCA 111668 Query 64171 TAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCT-AATA 64229 | | || | || || | | || | ||| | || ||||| || |||| || Sbjct 111669 TGGTAATCTGGGCCGGGTCCACAAAGTCAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATG 111727 Query 64230 CGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCAT 64272 ||||| |||||||| || |||||||| ||||| | ||||| Sbjct 111728 CGAGAGGTGATTTTGTCGAACATGACGCGTTCCTGGCGTCCAT 111770 >seq1980 Length=102293 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | |||||||| || || || ||||| || || || || | ||| Sbjct 6658 GTGCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 6717 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || ||||| ||||| || || || | || ||||||||| ||||| || | ||| | | Sbjct 6718 TAGGTGTCAATGGCTGAATCAATGTCTCCTTTATGAATTCCAACTGCCACTCTCATCAGC 6777 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 ||||||||||| || ||| ||| Sbjct 6778 ATGTGCTGAGGCCTCTCAGCAA 6799 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| || | || || ||||||||||||| Sbjct 3987 TCCAACCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCAGCTATATGGATAT 4046 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||| |||| || | ||||| ||||| || | | ||||| Sbjct 4047 TAAGGGACTGGCTCTGGTCAATGTAGGCACCGCGATCTGCTGCCATCTTGAGAACCGTCT 4106 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||| | |||||||| | |||| | ||| || || Sbjct 4107 TCTGGGAGATTTCCCACACTGTTTTATAGAGCTGCTTCAGATCATCAGG 4155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629771796515040