Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq210 183 7e-41 seq86 93.3 1e-13 >seq210 Length=679747 Score = 183 bits (202), Expect = 7e-41 Identities = 181/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || |||||||| || || |||||| Sbjct 555762 ATGCCTCCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 555703 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || |||||||| || |||||||| || |||||| Sbjct 555702 GAGAGGGTGCGACCATCTTCCAGCTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGA 555643 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| ||||| ||||||||||| ||||| |||| ||| ||||| || || Sbjct 555642 GGGATCCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGTGTCGCTGGGCTCC 555583 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||||||||| | || || ||||| |||||||| ||| Sbjct 555582 ACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATCTTG 555529 >seq86 Length=915686 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| | |||||||||| | |||| || ||||| ||||| || || ||| | || |||| Sbjct 258808 GAGCTCTGTGGTGGTATTTTGTCTCCAAGGGAATCGAATATCTGGACACTGTATTTTTCA 258749 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 |||| | || ||||| || || ||| || || || || || || || | || |||| Sbjct 258748 TCCTGAGGAAAAAATTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTGCACCATGT 258689 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 | || | | ||||| || || |||||| | |||||||||||| Sbjct 258688 TCACGCTCTGGTGGATTGGCATCAAATGGGTGGCAGGAGGACAA 258645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151312571165144