Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1310 118 7e-22 >seq1310 Length=240470 Score = 118 bits (130), Expect = 7e-22 Identities = 132/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || ||| |||||||| |||||||| |||||||||||||| || || Sbjct 118499 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGGAGCGCATAGCTGGCGATGTTGAACGGC 118440 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||| || ||| || | |||||| ||||||||||| ||||| |||| | Sbjct 118439 ACTCCCAGACCCATATCACCC-GAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACA 118381 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 |||||| ||||| || | | || ||| || || ||||| || ||| || |||| Sbjct 118380 CACGTAGAACTGGCAGAGAGCGTGGCAGGGCGGCAGAGCCATGAGGGGCAGGTCT 118326 Score = 102 bits (112), Expect = 6e-17 Identities = 141/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| |||||||||| || || | |||||||||||| |||||||| || || ||||| Sbjct 116834 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGCCCCAGGTC 116775 Query 25833 TCCATCTTCCCTGTGCTC---AAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGC 25889 || || || | |||| || || || ||||| ||||| | |||||| ||||| Sbjct 116774 GCCCTCCTCTC---GCTCTGTGAACCCGAGGTTGTCCAAGAAGTCCCGGGAACCGTTGGC 116718 Query 25890 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCT-CTTTGGAGTTTGTGGACCCTCTGA--- 25945 |||||||| || || || ||||| || || | ||||| | || || ||||| ||| Sbjct 116717 ATCCCAGATTTTCACTCCTTTCTCTGACAGTTCCTTTGCATTTGTTGAACCCTGTGATGT 116658 Query 25946 CGAACCACAGCAGC 25959 |||| ||| |||| Sbjct 116657 AGAACAACATCAGC 116644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340113481905714