Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2942 156 7e-34 seq4870 120 5e-23 seq4014 111 2e-20 seq1344 111 2e-20 seq3217 96.9 5e-16 >seq2942 Length=10035 Score = 156 bits (172), Expect = 7e-34 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 16464 ACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523 ||||||| |||||||||||||| || ||||| ||||||||||| || || |||||||||| Sbjct 8889 ACATCCAGGGAATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGC 8948 Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583 || |||| || || |||| || |||| || | ||| | ||| ||||||| ||| || Sbjct 8949 GTATCTCGGGTCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTGGAGAACG 9008 Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643 | |||| ||| || || ||| ||||||||||| || | ||||| || ||| |||||| Sbjct 9009 TCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTGACCGCCATGG 9068 Query 16644 ATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | || || || |||| | || ||||| Sbjct 9069 ATGTGGTGTACGCTCTGAAGAGGCAGGGCCG 9099 >seq4870 Length=1304 Score = 120 bits (132), Expect = 5e-23 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||||||||| || ||||||||||||||| |||| || || |||| || |||| || Sbjct 1303 CGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGACCCGC 1244 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| | ||| ||||||| ||| ||| |||| |||||| || ||| ||||||||| Sbjct 1243 GGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGAGCAC 1184 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || || | ||||| || ||| |||||||| | || || || | || | || ||||| Sbjct 1183 GCCAAGAGGAAGACGGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGGCCG 1125 >seq4014 Length=3314 Score = 111 bits (122), Expect = 2e-20 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| |||||||||||||| || || Sbjct 1712 CGCCAAGCGCCACCGCAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 1653 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| ||||||||||| || || |||||||||||| |||| || || |||| || |||| Sbjct 1652 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGA 1594 >seq1344 Length=280262 Score = 111 bits (122), Expect = 2e-20 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| |||||||||||||| || || Sbjct 19704 CGCCAAGCGCCACCGCAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 19645 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| ||||||||||| || || |||||||||||| |||| || || |||| || |||| Sbjct 19644 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGA 19586 >seq3217 Length=2706 Score = 96.9 bits (106), Expect = 5e-16 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||||||| |||| || || |||| || |||| || | ||| | ||| ||||| Sbjct 1135 GGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTC 1076 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| || ||| ||||||||||| || | ||||| || Sbjct 1075 CTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTG 1016 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| |||||||| | || || || | || | || ||||| Sbjct 1015 ACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGGCCG 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069880561874