Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13]
5,818 sequences; 800,491,834 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2942 156 7e-34
seq4870 120 5e-23
seq4014 111 2e-20
seq1344 111 2e-20
seq3217 96.9 5e-16
>seq2942
Length=10035
Score = 156 bits (172), Expect = 7e-34
Identities = 161/211 (76%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 16464 ACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGC 16523
||||||| |||||||||||||| || ||||| ||||||||||| || || ||||||||||
Sbjct 8889 ACATCCAGGGAATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGC 8948
Query 16524 GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCG 16583
|| |||| || || |||| || |||| || | ||| | ||| ||||||| ||| ||
Sbjct 8949 GTATCTCGGGTCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTGGAGAACG 9008
Query 16584 TTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGG 16643
| |||| ||| || || ||| ||||||||||| || | ||||| || ||| ||||||
Sbjct 9009 TCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTGACCGCCATGG 9068
Query 16644 ATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | || || || |||| | || |||||
Sbjct 9069 ATGTGGTGTACGCTCTGAAGAGGCAGGGCCG 9099
>seq4870
Length=1304
Score = 120 bits (132), Expect = 5e-23
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555
||||||||||| || ||||||||||||||| |||| || || |||| || |||| ||
Sbjct 1303 CGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGACCCGC 1244
Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615
| ||| | ||| ||||||| ||| ||| |||| |||||| || ||| |||||||||
Sbjct 1243 GGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGAGCAC 1184
Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| || | ||||| || ||| |||||||| | || || || | || | || |||||
Sbjct 1183 GCCAAGAGGAAGACGGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGGCCG 1125
>seq4014
Length=3314
Score = 111 bits (122), Expect = 2e-20
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| | || || ||||||||||| |||||||||||||| || ||
Sbjct 1712 CGCCAAGCGCCACCGCAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 1653
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
||| ||||||||||| || || |||||||||||| |||| || || |||| || ||||
Sbjct 1652 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGA 1594
>seq1344
Length=280262
Score = 111 bits (122), Expect = 2e-20
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| | || || ||||||||||| |||||||||||||| || ||
Sbjct 19704 CGCCAAGCGCCACCGCAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 19645
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
||| ||||||||||| || || |||||||||||| |||| || || |||| || ||||
Sbjct 19644 CCGCCGTCTGGCTCGCCGCGGCGGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGA 19586
>seq3217
Length=2706
Score = 96.9 bits (106), Expect = 5e-16
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|||||||||||| |||| || || |||| || |||| || | ||| | ||| |||||
Sbjct 1135 GGAGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTC 1076
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| |||||| || ||| ||||||||||| || | ||||| ||
Sbjct 1075 CTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTG 1016
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| |||||||| | || || || | || | || |||||
Sbjct 1015 ACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGGCCG 975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069880561874
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |