Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq210 109 4e-19 seq1721 89.7 4e-13 >seq210 Length=679747 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | ||| || |||||||| || || ||||||||||| | Sbjct 555759 CCTCCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 555700 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || || || ||| | || |||| ||| ||||| ||| Sbjct 555699 AGGGTGCGACCATCTTCCAGCTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGG 555640 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| ||||| | | | ||||||| ||||||| Sbjct 555639 ATCCCCTCTTTGTCCTGGATCTTTGCT--TTCACATTCTCTATGGTGTCGCTGGGCTCCA 555582 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||| || || |||| || || ||||| |||||||| ||| Sbjct 555581 CCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATCTTG 555529 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || |||||||| || || ||||||||||| | Sbjct 555987 CCTCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 555928 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||| || || || ||| | || |||| ||| ||||| ||| Sbjct 555927 AGAGTGCGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 555868 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | |||||||| ||||||| Sbjct 555867 ATCCCCTCTTTGTCCTGGATTTTAGCT--TTGACGTTCTCGATAGTGTCGCTGGGCTCCA 555810 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || ||||| || || || ||||| |||||||| Sbjct 555809 CCTCCAGTGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 555761 >seq1721 Length=144067 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || ||||| ||||||||||| | | ||| | | ||||||| || Sbjct 118358 TGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGC 118299 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | ||||||| ||| ||||| || | |||||| ||||| || || Sbjct 118298 TTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATCTTG 118239 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | |||||| || | ||||||||| || || | Sbjct 118238 GC--CTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAG 118181 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 118180 TGAGGGTCTTGACGAAGATCTGCAT 118156 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| | ||| | | || |||| || Sbjct 118130 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGC 118071 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || | || ||| ||||| || | ||| || ||||| |||| Sbjct 118070 TTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTA 118011 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | |||||| || | ||||||||| || || || Sbjct 118010 GCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTG 117951 Query 16913 AGCGTTTTGACAAAAATCTGCAT-TTTGTA 16941 || ||||| ||||| |||||||| |||||| Sbjct 117950 AGGGTTTTCACAAAGATCTGCATGTTTGTA 117921 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| | | ||| | | ||||||| || Sbjct 118586 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGC 118527 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || | || ||| ||||| || | || || ||||| || || Sbjct 118526 TTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCTTGGATCTTG 118467 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| |||||| |||| ||||||||| ||||| | Sbjct 118466 GC--CTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTTCCAG 118409 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 118408 TGAGGGTCTTGACGAAGATCTGCAT 118384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405059276475820