Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq120 127 1e-24 seq261 109 4e-19 seq16 109 4e-19 >seq120 Length=852717 Score = 127 bits (140), Expect = 1e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 |||| ||||||| || | ||| || || ||||| ||||||||||| ||||||||| || Sbjct 464853 CCACAGACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCA 464794 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 ||||||| || | |||||| |||||||| || | | ||||||||||||| | |||| Sbjct 464793 AAAACGATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGCTGCAGGACATGCTTG 464734 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || | || |||||||||||| || || || ||||| || || || || Sbjct 464733 ATGGGTTCATCAGAAAATTTGTGCTGTGTACCGAGTGTGACAACCCTGAAACTGATCT 464676 >seq261 Length=616988 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||||||||| ||||| || |||||||| Sbjct 594410 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 594469 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || |||| |||||||||| || Sbjct 594470 TCATCCATTCATGTGCATCACCAATTAGATGATGA 594504 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||| | | ||||||||| |||||||||||| Sbjct 596465 CTCTCTCTTCAAAGTTCTTTTCAACTTTGTCGTAAGGTACTTGTCAACTATCGGTCTCGT 596524 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 596525 GCCAATATTTAGCCTTA 596541 >seq16 Length=1912977 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||||||||||||||||||||| ||||| | |||||| | Sbjct 1815739 AAGCCCGTTCCCTTGACTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTAGGAATCTCAT 1815680 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||||| Sbjct 1815679 TCATCCATTCATGCATGTCACTAATTAGATGACGA 1815645 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||| |||||||||||||| | |||||||| | ||||||||||| Sbjct 1814629 CTCTCTCTTCAAAGTTCCTTTCAACTTTCCCTTAAGGTACTTGCTGATTATCGGTCTCGT 1814570 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1814569 GCCGGTATTTAGCCTTA 1814553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923449940758