Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13]
5,818 sequences; 800,491,834 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq120 127 1e-24
seq261 109 4e-19
seq16 109 4e-19
>seq120
Length=852717
Score = 127 bits (140), Expect = 1e-24
Identities = 135/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372
|||| ||||||| || | ||| || || ||||| ||||||||||| ||||||||| ||
Sbjct 464853 CCACAGACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCA 464794
Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432
||||||| || | |||||| |||||||| || | | ||||||||||||| | ||||
Sbjct 464793 AAAACGATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGCTGCAGGACATGCTTG 464734
Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
| || || || | || |||||||||||| || || || ||||| || || || ||
Sbjct 464733 ATGGGTTCATCAGAAAATTTGTGCTGTGTACCGAGTGTGACAACCCTGAAACTGATCT 464676
>seq261
Length=616988
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||| |||||||||||| ||||| || ||||||||
Sbjct 594410 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 594469
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| || |||| |||||||||| ||
Sbjct 594470 TCATCCATTCATGTGCATCACCAATTAGATGATGA 594504
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||| | | ||||||||| ||||||||||||
Sbjct 596465 CTCTCTCTTCAAAGTTCTTTTCAACTTTGTCGTAAGGTACTTGTCAACTATCGGTCTCGT 596524
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||||
Sbjct 596525 GCCAATATTTAGCCTTA 596541
>seq16
Length=1912977
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||| |||||||||||||||||||||| ||||| | |||||| |
Sbjct 1815739 AAGCCCGTTCCCTTGACTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTAGGAATCTCAT 1815680
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| |||||||||||||||||||
Sbjct 1815679 TCATCCATTCATGCATGTCACTAATTAGATGACGA 1815645
Score = 86.0 bits (94), Expect = 4e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||| |||||||||||||| | |||||||| | |||||||||||
Sbjct 1814629 CTCTCTCTTCAAAGTTCCTTTCAACTTTCCCTTAAGGTACTTGCTGATTATCGGTCTCGT 1814570
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 1814569 GCCGGTATTTAGCCTTA 1814553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334923449940758
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |