Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1721 136 9e-27 seq210 134 3e-26 >seq1721 Length=144067 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 118140 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 118081 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| | | ||||||||| || ||| ||||| || Sbjct 118080 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 118021 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || |||| |||||| | | || || || | ||||| || Sbjct 118020 CTGGATTTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 117961 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 117960 CTTGCCAGTGAGGGTTTTCACAAAGATCTG 117931 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||||||||||||||| |||||||| |||| ||||||||||| | || | ||||| Sbjct 118596 CAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 118537 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| | | ||||||||| || ||||||||| || Sbjct 118536 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTC 118477 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 118476 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 118417 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || || || || || Sbjct 118416 CTTTCCAGTGAGGGTCTTGACGAAGATCTG 118387 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||||||||| || || || ||||||| ||||||||||| | || | ||||| Sbjct 118368 CAGCACAAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 118309 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| || ||| || || || Sbjct 118308 CTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 118249 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | |||||| | | || || || | ||||| || Sbjct 118248 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 118189 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || || || || || Sbjct 118188 CTTGCCAGTGAGGGTCTTGACGAAGATCTG 118159 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||||||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 109109 CAGCACAAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 109050 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| || |||||||| | | ||||||||| || ||| ||||| Sbjct 109049 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTC 108996 >seq210 Length=679747 Score = 134 bits (148), Expect = 3e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || |||||||| || ||||| || |||| ||||||||||| | ||| | ||||| Sbjct 555973 CAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATC 555914 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | ||||||||| ||| || || ||| || Sbjct 555913 TTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCCTCTTTGTC 555854 Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||| || ||| || || ||| |||| ||||| | | || || |||| ||||| | Sbjct 555853 CTGGAT-TTTAGCTTTGACGTTCTCGATAGTGTCGCTGGGCTCCACCTCCAGTGTGATGG 555795 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || ||||| || |||||||| || || Sbjct 555794 TCTTGCCGGTGAGGGTCTTCACAAAGATCTG 555764 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | ||||||||| ||||| || ||||| || |||| ||||||||||| | || | Sbjct 555751 AAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 555692 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||||||||| || || || || || | ||||||||| ||| || || || Sbjct 555691 ACCATCTTCCAGCTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGGATCCCCTC 555632 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||||| |||||| ||||| || | |||||| | | || || |||| || Sbjct 555631 TTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGTGTCGCTGGGCTCCACCTCCAGGGT 555572 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||| || | || |||||||| || || Sbjct 555571 GATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTG 555536 Score = 104 bits (114), Expect = 6e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || ||||| || |||| ||||||||||| | || Sbjct 556432 CGGAGACGCAGGACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTG 556373 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 199515 | ||||||||||||||||| || ||||| || |||||||||||||| Sbjct 556372 CGACCATCTTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTC 556326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178833719499806