Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq210 113 3e-20 seq1721 89.7 4e-13 >seq210 Length=679747 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| || | ||| || ||| |||||| || || ||||| ||||| Sbjct 555760 GCCTCCCCTAAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 555701 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || |||| ||||||||| ||||||||||| | ||| || || | || Sbjct 555700 GAGGGTGCGACCATCTTCCAGCTGCTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGG 555641 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||| ||||| |||||| ||| ||| | | | || | |||||| Sbjct 555640 GATCCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGTGTCGCTGGGCTCCAC 555581 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || || || || || ||||| || || ||||| ||||||||| || Sbjct 555580 CTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATCTTG 555529 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||||| || || ||| |||||| || || ||||| ||||| Sbjct 555988 GCCTCCCCTCAGACGCAGCACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 555929 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || |||| ||||||||||||||| ||||| | ||| || || | || Sbjct 555928 GAGAGTGCGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 555869 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||| ||||| || || ||| || | | || || | |||||| Sbjct 555868 GATCCCCTCTTTGTCCTGGATTTTAGCTTTGACGTTCTCGATAGTGTCGCTGGGCTCCAC 555809 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || || | || || ||||| |||||||| Sbjct 555808 CTCCAGTGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 555761 >seq1721 Length=144067 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| || |||| ||| | || || ||| |||||||| || ||||| ||||| Sbjct 118382 CCGCCCCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAG 118323 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| || || | ||| || || | |||| Sbjct 118322 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGA 118263 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 118262 ATGCCCTCCTTGTC 118249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910588905214