Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq25 147 1e-29 seq181 113 3e-19 seq384 111 1e-18 seq1721 100 2e-15 seq1692 93.3 3e-13 seq575 89.7 3e-12 >seq25 Length=1388224 Score = 147 bits (162), Expect = 1e-29 Identities = 406/615 (66%), Gaps = 8/615 (1%) Strand=Plus/Plus Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 || ||||| ||||| |||||||| | | | ||| || |||||||| ||||| || Sbjct 539568 GACTCTCTGTTTGAGGGAATTGACTTTTACACTTCAATCACAAGGGCACGGTTTGAGGAG 539627 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | ||| || ||||| || |||| | || || ||||| | | || |||| | Sbjct 539628 CTCAATTCGGAGCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTGCAAGATGCC 539687 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| || | |||||||||||||| || || || || || || |||||||| Sbjct 539688 AAACTGGACAAGTCCAAGGTCCATGAAATTGTCCTGGTCGGTGGCTCCACCAGAATTCCC 539747 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 ||||| ||||| ||| || | | ||| ||||| | | | | || | || | || Sbjct 539748 AAAAT-CCAGAAACTCTTACAGGACTTTTTCAATGGCAGAGACCTGAACAAGAGCATCAA 539806 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTATCAG-GTCA- 475851 || |||||||| || || || ||||| || ||||| || ||||| | || | | || Sbjct 539807 CCCAGATGAAGCCGTGGCTTACGGAGCAGCAGTCCAGGCTGCTATCCTCATGGGCGACAC 539866 Query 475852 ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 ||| ||||| | | || | | || | ||||| |||| || || | || | Sbjct 539867 TTCA---GAGAACGTCCAGGATCTGCTGCTGCTGGACGTGGCTCCTCTGTCTCTGGGCAT 539923 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 ||||| | || || ||||||| | | || | |||| || | ||||| | ||| Sbjct 539924 CGAAACTGCAGGTGGAGTTATGACGCCTTTAATCAAGCGAAACACCACAATCCCCTCCAA 539983 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | | | | || ||||| || || || || || || ||| ||||| | | Sbjct 539984 GCAGACCCAGATTTTCTCCACCTACTCAGACAACCAGCCAGGTGTGCTGATCCAGGTGTA 540043 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||||| ||| | || ||||| || ||| ||| || | ||| | || ||| Sbjct 540044 CGAAGGTGAGAGAGCCATGACCAAAGACAACAACCTACTGGGCAAGTTTGAGCTCACAGG 540103 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||| ||||||||||||||||| || || || | || || || || || || || || || Sbjct 540104 TATCCCTCCTGCTCCCAGAGGTGTGCCACAGGTGGAGGTAACGTTCGACATCGACGCCAA 540163 Query 476152 TGGTATTCTTAATGT 476166 ||| ||||| || || Sbjct 540164 TGGCATTCTGAACGT 540178 >seq181 Length=707246 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || || || || ||||| ||||||||||||||||| ||||||| Sbjct 106055 ATGCTGTTATCACGGTACCTGCCTACTTCAATGACTCTCAACGTCAAGCAACCAAAGATG 106114 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||||| ||||| || | ||||||||||| || || ||||| || Sbjct 106115 CTGGAACTATCTCTGGTCTAAATGTGTTGAGAATTATTAATGAGCCCACTGCAGCAGCTA 106174 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | |||||||| | |||||||| Sbjct 106175 TCGCTTATGGCTTGGATAAGAA 106196 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || ||||| || || || || || || || ||||| || || || || || || ||||| Sbjct 90369 GCTGTAATCACAGTACCTGCCTACTTCAACGATTCCCAGCGCCAGGCCACAAAGGATGCC 90310 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | || | || || |||||| | ||||| || ||||||||||| ||||| ||| || Sbjct 90309 GGTACCATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACCGCAGCTGCAATT 90250 Query 474857 GCTTATGGTCTTGATAAGAA 474876 |||||||| | || ||||| Sbjct 90249 GCTTATGGGTTGGACAAGAA 90230 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || || || ||| || |||| ||| | || ||| || ||||||||||| | Sbjct 108310 ACAAAGGACAACAACTTGCTGGGAAAGTTTGAGCTGACAGGCATCCCTCCTGCTCCACGT 108369 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || ||||| || |||||||| || ||||| |||||||| |||||||| || ||||| || Sbjct 108370 GGCGTTCCCCAGATTGAAGTGACATTTGACATTGATGCCAATGGTATCCTCAATGTCTCT 108429 Query 476171 GCTTGTGATAA 476181 ||| |||||| Sbjct 108430 GCTGTTGATAA 108440 >seq384 Length=497998 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| || | ||||| |||||||| | || || | ||| | || || Sbjct 330195 TGAAGGTGAGAGGGCCATGACTAAGGATAATAATATCCTGGGGAAGTTTGAACTCACTGG 330136 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| ||||||||||||||||||||||| ||||| || || |||||||||||||| || Sbjct 330135 TATTCCACCTGCTCCCAGAGGAGTTCCTCAGATTGAGGTGACCTTTGATATTGATGCCAA 330076 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| || || |||| Sbjct 330075 TGGCATTCTCAACGTGTCTGC 330055 >seq1721 Length=144067 Score = 100 bits (110), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||| || || || |||||| | || || |||| || || | | Sbjct 118373 AGACGCAGCACAAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTGCGG 118314 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| ||||| | || || ||||| ||||| || ||| Sbjct 118313 CCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 118254 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 |||||||| ||||| |||||| ||||| || ||| || | |||||||| Sbjct 118253 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 118194 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| ||||| || || Sbjct 118193 ATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 118159 >seq1692 Length=147762 Score = 93.3 bits (102), Expect = 3e-13 Identities = 116/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| ||||| | | || || |||||||| | || || Sbjct 47659 GTGGAGATCATTGCCAATGACCAGGGTAACCGCATCACCCCCTCATATGTGGCCTTCACC 47600 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 ||| ||| | ||| ||||| |||||||| || ||| ||||| | ||||| |||| Sbjct 47599 AGTGAGGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATC-AGCTGACCTCTAACCCTGA 47541 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || ||| | |||||||| || ||| |||||||||| Sbjct 47540 GAACACTGTCTTTGATGCCAAGAGACTGATTGGTCG 47505 >seq575 Length=385205 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| ||||| | || ||||| ||| || || || || | ||| |||| ||| Sbjct 327043 GCAGTTGGCATTGACCTGGGCACTACCTACTCCTGCGTGGCAGTGTTTCAACATGGCAAA 326984 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||||||||| || || || || || || |||||| | |||||| Sbjct 326983 GTTGAGATCATTGCCAATGACCAGGGAAACAGGACCACGCCCAGTTATGTTGCCTTTACT 326924 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || ||||| || ||||| ||||| || || | |||| ||| Sbjct 326923 GACACTGAGAGGCTGATTGGGGATGCAGCCAAGAACCAAGTTGC 326880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267929637751064