Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1344 149 8e-30 seq1081 149 8e-30 seq181 149 8e-30 seq755 132 6e-25 seq288 93.3 5e-13 seq1579 87.8 2e-11 seq2456 86.0 8e-11 >seq1344 Length=280262 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| | ||||||||||||||||| | | || Sbjct 18195 GCTTGGCCAGCTCTCCGGGCAGCAGCAGCCTGACGGCGGTCTGGATCTCCCTGGACGTGA 18254 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 18255 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 18314 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 18315 TGTCGCTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 18374 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 18375 GCACCTGCTTCAGCACCTTGTA 18396 >seq1081 Length=288474 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| | ||||||||||||||||| | | || Sbjct 275073 GCTTGGCCAGCTCTCCGGGCAGCAGCAGCCTGACGGCGGTCTGGATCTCCCTGGACGTGA 275014 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 275013 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 274954 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 274953 TGTCGCTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 274894 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 274893 GCACCTGCTTCAGCACCTTGTA 274872 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| | ||||||||||||||||| | | || Sbjct 279991 GCTTGGCCAGCTCTCCGGGCAGCAGCAGCCTGACGGCGGTCTGGATCTCCCTGGACGTGA 279932 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 279931 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 279872 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 279871 TGTCGCTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 279812 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 279811 GCACCTGCTTCAGCACCTTGTA 279790 >seq181 Length=707246 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| | | || Sbjct 112368 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCTGGACGTGA 112309 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||||||||| ||| || || | ||||||| || | | Sbjct 112308 TGGTGGATCTCTTGTTGTAGTGCGCCAGGCGGGACGCTTCCCCGGCGATGCGCTCAAAGA 112249 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||| ||||||| | ||| | ||| |||||| ||| ||| |||| Sbjct 112248 TGTCGTTGACAAACGAATTCATGATCCCCATGGCTTTGGAGGAGATCCCCGTGTCCGGGT 112189 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 112188 GCACCTGCTTCAGCACCTTGTA 112167 >seq755 Length=318311 Score = 132 bits (146), Expect = 6e-25 Identities = 218/309 (71%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| |||||||||| ||| | || | |||||||| ||||| |||||||| Sbjct 110926 CTGGTCGACGTAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGA 110985 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAA 1630180 | ||| ||||| || | | |||| || | || | ||| || | || || Sbjct 110986 GTTGCCATTGGTACCAGAGATGTAGCTTCCTGTGGATCTGATGCAGCT---GACCGCCAC 111042 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | |||||||| || ||||||||||||||||| || ||||| || || ||||| ||||||| Sbjct 111043 A-CCGATGCCTCCAGCCGACTTGGAGATGAGGGCACACTGCTTCAGAGTGTCATAGATGC 111101 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGGGTG 1630295 | ||||| |||| | |||||| | | || ||||| ||| || | || | | || Sbjct 111102 CTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCTGTTG 111160 Query 1630296 CGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGC 1630355 || || ||||||||||| || || | || ||||||| ||| | ||||| Sbjct 111161 ----GTTCCAGCGTTGAAGAGAGTCGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 111216 Query 1630356 GTCGTAGGT 1630364 || |||||| Sbjct 111217 GTTGTAGGT 111225 Score = 100 bits (110), Expect = 3e-15 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | | ||||| |||| ||||||| ||||||| | ||| |||| Sbjct 109836 TCCACAGCCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCGC 109895 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | || || || | ||| |||||||||||| ||||| | ||||| | |||| |||| | Sbjct 109896 CGGACAGAACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTAC 109955 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | ||| |||||||| | |||| || || ||| | || || Sbjct 109956 CCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 110015 Query 1627475 CGT 1627477 ||| Sbjct 110016 CGT 110018 Score = 91.5 bits (100), Expect = 2e-12 Identities = 265/417 (64%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 1628166 GACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGT 1628225 |||||| || ||||| |||||| || | | || ||||| |||||||||||| | | Sbjct 110491 GACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTT 110550 Query 1628226 CAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGAC 1628285 | |||| |||||| |||| |||||||| |||| || ||||| |||||| | ||| Sbjct 110551 CCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCCGTCTCCGTCTGCGACTCGAT 110610 Query 1628286 GATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNN 1628345 |||||| |||| | ||| | || ||| ||| | || | || | Sbjct 110611 GATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGGCCCTCCCTTCCTTCTCATA 110670 Query 1628346 NNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGA 1628405 ||||| || | || ||||||||| ||| || || || Sbjct 110671 CCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGTCCAGGACAGGCGTT 110730 Query 1628406 CGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGT 1628465 ||||| | || |||||||| | || || | | ||| || || || | Sbjct 110731 GGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGATCGGGGAT 110790 Query 1628466 CCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAG 1628525 ||| || ||||| || ||||| | |||| | ||||||||| || |||||| || || Sbjct 110791 CCAAAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAG 110850 Query 1628526 GTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||||| |||||| | ||| |||||||||||||| ||| ||| ||||| || Sbjct 110851 CTCGAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAAGTACATGGCGAAGGCTCC 110907 >seq288 Length=568027 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||| ||||| || ||| | ||||| Sbjct 277965 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 277906 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 ||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 277905 AATGACCTGCCGCGGTCACTTGATGGCCATCACGCGTCACGGCATCAACCG 277855 >seq1579 Length=169011 Score = 87.8 bits (96), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890 |||||||| || ||||||| ||||||||||||||| |||||||||| ||| | | ||| Sbjct 145 ACCTCCTCTGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 204 Query 869891 TAGCGGATAGGGAAGAGGACAAAGCG 869916 || |||| ||||||| ||| ||||| Sbjct 205 TACTGGATGGGGAAGATGACGAAGCG 230 >seq2456 Length=181455 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| ||| | ||| | |||||| | ||||||||| Sbjct 13845 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACAGTGGCCAAC 13786 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| ||||| | || ||||||||| | ||||| || |||||||| Sbjct 13785 ATGATCAAAGGCAAAACCCCGGAGGAGATCAGGAAGACTTTCAACATCAA 13736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106661747674306