Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq25 159 3e-33 seq181 113 3e-19 seq575 98.7 7e-15 seq384 91.5 1e-12 >seq25 Length=1388224 Score = 159 bits (176), Expect = 3e-33 Identities = 928/1471 (63%), Gaps = 20/1471 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | ||| || ||||| |||||||| || | || || || || || | Sbjct 540194 TTTGTCGACGGCGGACACGTTCAGAATGCCATTGGCGTCGATGTCGAACGTTACCTCCAC 540135 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| ||||||| ||||| ||| | | ||| | ||||| || Sbjct 540134 CTGTGGCACACCTCTGGGAGCAGGAGGGATACCTGTGAGCTCAAACTTGCCCAGTAGGTT 540075 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || ||||| || | || ||||| ||| | | ||||| || | | || || Sbjct 540074 GTTGTCTTTGGTCATGGCTCTCTCACCTTCGTACACCTGGATCAGCACACCTGGCTGGTT 540015 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 ||||| || || | || | ||||| | | || | || ||||| ||||||| | | Sbjct 540014 GTCTGAGTAGGTGGAGAAAA-TCTGGGTCTGCTTGGAGGGGATTGTGGTGTTTCGCTTGA 539956 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||||| ||||| || ||||| | || ||||| ||||||| || || | Sbjct 539955 TTAAAGGCGTCATAACTCCACCTGCAGTTTCGATGCCCAGAGACAGAGGAGCCACGTCCA 539896 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || || | || || ||| | || | || ||||| || || | | Sbjct 539895 GCAGCAGCAGATCCTGGACGTTCTCTGAAGTGTCGCCCATGAGGATAGCAGCCTGGACTG 539836 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | || || || || || |||||||| || || | | | || || | | | ||||||| Sbjct 539835 CTGCTCCGTAAGCCACGGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCTCTGCCATTGA 539776 Query 281835 AAAAATT-TGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 |||| | || |||| ||| ||| | || ||||| | | || || || || | || Sbjct 539775 AAAAGTCCTGTAAGA-GTT-TCTGGATTTTGGGAATTCTGGTGGAGCCACCGACCAGGAC 539718 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 281952 ||||||||| |||| || || |||||||| | ||| | | || ||||| || || Sbjct 539717 AATTTCATGGACCTTGGACTTGTCCAGTTTGGCATCTTGCAGGGCCTTCTCAACTGGCTC 539658 Query 281953 AAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012 || | || || | || ||| || || || || || || || || ||| Sbjct 539657 CAGTGTTCCCCTGAAGAGCTCCGAATTGAGCTCCTCAAACCGTGCCCTTGT--GATTGAA 539600 Query 282013 AT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 282070 | || || |||||||| || |||| ||| || | || || | | || || || Sbjct 539599 GTGTAAAAGTCAATTCCCTCAAACAGAGAGTCGATCTCGATGTTGGCCTGTGTGCTGGAT 539540 Query 282071 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 282130 || | | | || || | ||||| ||||| | ||||| | | ||| | || || Sbjct 539539 GACAAGGTCCTCTTTGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACCGCTCT--CTTAT 539482 Query 282131 --TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188 || | | || | || | |||||| || || || || || | | || | | Sbjct 539481 TATGGCTGATGTCCTTCTTGTGTTTTCTTTTAAATTCCTCTACGAAGTGGTTGACCATGC 539422 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | || ||||| || || || || | | || | ||||| || ||| | || | || | Sbjct 539421 GGTTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGCGGTGGCTTTCACCTCAAAGA 539362 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 || || || | | || | | || ||| ||| || ||||| | |||||| || | Sbjct 539361 TGCCGTCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCGCCACCGAGATCAAAGATGA 539302 Query 282309 GTACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 | || || || | |||| || |||||| || ||||| |||| || || || | Sbjct 539301 GCACGTTGCGCTC-TCCTCTT--TTACCTTTATCCAGGCCATAGGCAATGGCTGCTGCTG 539245 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 | || ||||| || || |||| |||||| || |||| || || ||||| || |||| Sbjct 539244 TGGGCTCATTGATGATCCTCAGAACATTTAGTCCAGAGATCACCCCGGCATCCTTGGTGG 539185 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTT 282485 |||||||||||||||| || || || || || || || || || || | | || | Sbjct 539184 CTTGTCTTTGTGAATCATTGAAGTAAGCCGGCACTGTGATGACTGCGTTCGACACCCTCT 539125 Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 ||| | || || ||| | | |||||| ||| | | ||| || |||| | | Sbjct 539124 GTCCCAGGTAGGCCTCAGCTATCTCTTTCATCTTAACCAGGACCATGGAGGAAACCTCCT 539065 Query 282546 CTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 282605 | ||| | | ||||| || | ||| || | | | || || | Sbjct 539064 CAGGATAGAACGCCTTGGTCTCCCCCTTATAGTCCACCTGGACTTTGGGCTTTCCATTGT 539005 Query 282606 CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 282665 || | || || || || ||||| |||||| || || || ||| |||| || || | Sbjct 539004 CACTGATCACCTTGAAAGGCCAGAGTTTCATGTCGGACTGGACAACCGGGTCGTTGAAGT 538945 Query 282666 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGAT 282725 ||| || || | ||||| || ||||| | || |||||||| || | || |||| | Sbjct 538944 TTCTTCCGATGAGCCGTTTGGCGTCAAAGACTGTGTTGGTTGGGTTCATGGCGACTTGGT 538885 Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785 ||||| || |||||||| || | ||||| ||||| || | ||||| ||||| | Sbjct 538884 TCTTGGCGGCGTCTCCAATGAGCCGCTCTGTGTCTGTGAAGGCCACATAGCTGGGAGTGG 538825 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 | | || || || || || || || || || ||||| |||| || | || || || | Sbjct 538824 TCCTGTTGCCCTGGTCGTTGGCGATTATCTCCACTTTGCCATGCTGGAAAACCCCAACGC 538765 Query 282846 AACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 | | | || || || | ||| || ||||| Sbjct 538764 AGGAATAGGTGGTGCCCAGATCGATGCCAAT 538734 >seq181 Length=707246 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| || | ||| || ||||| || ||||||||||||||||| ||| Sbjct 106196 TTCTTATCCAAGCCATAAGCGATAGCTGCTGCAGTGGGCTCATTAATAATTCTCAACACA 106137 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||| || |||| |||||||| || ||||| | ||| || || || || || Sbjct 106136 TTTAGACCAGAGATAGTTCCAGCATCTTTGGTTGCTTGACGTTGAGAGTCATTGAAGTAG 106077 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || || ||||| |||| Sbjct 106076 GCAGGTACCGTGATAACAGCAT 106055 >seq575 Length=385205 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| |||||||||||| ||||| || || || | | ||| Sbjct 326118 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTGGGTTCGTTGATGATACGAAGGACA 326177 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 326178 TTAAGGCCAGAGATTGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 326237 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | || |||| ||| || Sbjct 326238 GCAGGCACGGTCACTACAGCATTTGTGAC 326266 >seq384 Length=497998 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| || |||||||| || ||||| || || | || ||| Sbjct 331250 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTAGGCTCATTGATGATGCGCAGCACA 331309 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || || |||||||| |||||||| | || || || || || || Sbjct 331310 TTCAGCCCAGAGATGGCACCAGCATCTTTGGTGGCTTGACGCTGGGAGTCATTGAAGTAA 331369 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||||||||| || || |||| |||| Sbjct 331370 GCAGGAACAGTGATGACTGCAT-TGTT 331395 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||| || ||||| ||||||||||| | |||||| || || ||||| ||||| || Sbjct 330055 GCAGACACGTTGAGAATGCCATTGGCATCAATATCAAAGGTCACCTCAATCTGAGGAACT 330114 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| |||||||||| || || | | ||| | ||||| |||||||||| ||| Sbjct 330115 CCTCTGGGAGCAGGTGGAATACCAGTGAGTTCAAACTTCCCCAGGATATTATTATCCTTA 330174 Query 281546 GT 281547 || Sbjct 330175 GT 330176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740344760786868