Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1344 167 3e-35 seq1081 167 3e-35 seq181 163 4e-34 seq296 145 1e-28 seq755 136 6e-26 seq1579 86.0 9e-11 >seq1344 Length=280262 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 18396 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 18343 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||| |||||| |||| ||||||| | |||||| ||| Sbjct 18342 GGCATCATGAACTCGTTCGTCAGCGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 18283 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | ||||||||||||||||| | Sbjct 18282 CTGGCCCACTACAACAAGCGCTCCACCATCACGTCCAGGGAGATCCAGACCGCCGTCAGG 18223 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 18222 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 18174 >seq1081 Length=288474 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 274872 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 274925 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||| |||||| |||| ||||||| | |||||| ||| Sbjct 274926 GGCATCATGAACTCGTTCGTCAGCGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 274985 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | ||||||||||||||||| | Sbjct 274986 CTGGCCCACTACAACAAGCGCTCCACCATCACGTCCAGGGAGATCCAGACCGCCGTCAGG 275045 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 275046 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 275094 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 279790 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 279843 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||| |||||| |||| ||||||| | |||||| ||| Sbjct 279844 GGCATCATGAACTCGTTCGTCAGCGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 279903 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | ||||||||||||||||| | Sbjct 279904 CTGGCCCACTACAACAAGCGCTCCACCATCACGTCCAGGGAGATCCAGACCGCCGTCAGG 279963 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 279964 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 280012 >seq181 Length=707246 Score = 163 bits (180), Expect = 4e-34 Identities = 175/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || ||| |||||||| || ||||| Sbjct 112167 TACAAGGTGCTGAAGCAGGTGCACCCG-GACACG--GGGATCTCCTCCAA--AG-CCATG 112220 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||| ||||||||||||||||| | || ||||||| | || || ||| Sbjct 112221 GGGATCATGAATTCGTTTGTCAACGACATCTTTGAGCGCATCGCCGGGGAAGCGTCCCGC 112280 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || ||||||| | ||| ||| | | ||||||||||||||||||||| Sbjct 112281 CTGGCGCACTACAACAAGAGATCCACCATCACGTCCAGGGAGATCCAGACCGCCGTGCGC 112340 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||||||||| |||||||| || Sbjct 112341 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGTAC 112387 >seq296 Length=553401 Score = 145 bits (160), Expect = 1e-28 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| || ||||| ||||||||||| || ||||||||| || |||| ||||||| Sbjct 248022 CTCCAGCAGAGCCATGAGCATCATGAACTCCTTCGTCAACGACCTGTTCGAGCGCATCGC 248081 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 ||||||||| || ||||||| | |||||||||| ||| ||| || || ||| | Sbjct 248082 CACCGAGGCGTCCCGGCTGGCGCAGTACAACAAGCGCTCCACCATCACCAGCCGGGAGGT 248141 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||| || ||||| ||| | ||| ||| || ||||||| ||||||||| |||||||| Sbjct 248142 GCAGACGGCGGTGCGGCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGG 248201 Query 725138 CACCA 725142 ||||| Sbjct 248202 CACCA 248206 >seq755 Length=318311 Score = 136 bits (150), Expect = 6e-26 Identities = 205/291 (70%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| || ||| ||||||| || | || || ||||| || || || || | | Sbjct 111212 TGTCGGAGAAGTGGTTCACCCACGCCTCCCCGACTCTCTTCAACGCTGGAACCAACAGGC 111153 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||| | ||| ||||| |||||||||| Sbjct 111152 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTATG 111093 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 |||| || |||||||| || |||||||||||| |||| || ||||||||| | || | Sbjct 111092 ACACTCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCTGGAGGCATCGGTGTGGCGGTC- 111034 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || | || |||| | | || ||||| ||| | |||||||| Sbjct 111033 ---AGCTGCATCAGATCCACAGGAAGCTACATCTCTGGTACCAATGGCAACTCCAACGGG 110977 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || |||||||| | |||| ||| |||||||||| |||||||||||| Sbjct 110976 CTCGTCCCCATGCTGAGAGTTTACAACAACACGGCGCGTTACGTCGACCAG 110926 Score = 98.7 bits (108), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||| | |||||||| ||| | || | ||||||||||| |||| |||| | Sbjct 110000 TGCTGCTGGCCCCGATGCCCACAGCCTCCACCGCCCAGATCCTGGGTAACAACGAGTCCA 109941 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||||| | ||| |||||||||||||| ||| | || || || ||||| ||| | | Sbjct 109940 TCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTTCTGTCCGGCGAGTTTCAGATCG 109881 Query 263054 TCAACCGCCACCTGGTCAA 263072 |||||| ||||||| |||| Sbjct 109880 TCAACCCCCACCTGCTCAA 109862 Score = 86.0 bits (94), Expect = 9e-11 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | | || | ||||| || ||||| |||||| | ||| Sbjct 110628 CAGCTGTGGTACGCCATCATCGAGTCGCAGACGGAGACGGGTACGCCGTACATGCTGTAC 110569 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 || |||||| |||| || |||||||||||||| |||||||||| | || | ||| Sbjct 110568 AAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA-AGTGCAGCAA 110510 Query 262210 CCTGTGCACCGAGATCGTC 262228 ||| ||||| || |||||| Sbjct 110509 CCTCTGCACAGAAATCGTC 110491 >seq1579 Length=169011 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| ||||| || ||||| ||| | |||||||||| ||||| Sbjct 257 GAGCCGCTGCTGAAGGATAATCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 198 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || |||||||||||||| || ||||| || |||||||| Sbjct 197 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCGTTCTGGACGGCAGAGGAGGT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177250043206516