Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1471 105 5e-18 seq133 82.4 6e-11 >seq1471 Length=177575 Score = 105 bits (116), Expect = 5e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| |||||||||||||||| |||| | |||||||||||| || || |||| Sbjct 15874 CTCCTCTGAAAAACGCCCAGGCATCTCGCTCCGATGCAAACTTCTTGAAAGATGCAGCTG 15815 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | ||||| || |||||||||||||||||||||| Sbjct 15814 GAAATTTCTCCACTTGGCTCTTACATTCATCCC 15782 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 77576 AGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTT 77635 || ||||| || | ||||| || ||||| |||||||||||||||| || ||||||| Sbjct 16715 AGTGGGTGGTTGTGGCCCCAGTACACGCCGATGCCAGCTCGGGCTTTGCTCCGTCCGTTG 16656 Query 77636 GATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACC 77676 | | |||| |||||||| ||||| || ||||| |||||||| Sbjct 16655 GCTGAGCAGCAGCCGTCGGTGTAAACAACCACAGCGTCACC 16615 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||||||||| || | | ||||||||| | |||||| || ||||||| Sbjct 17397 CCAGACCACCTCCAGCTGTGTGTTTAATCTGTCCAGCTTGACAAAGTCTTCTTTGTTGAT 17338 Query 77371 AAC-TGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 || ||||| ||| | || ||||||||||||| |||||||||| || ||||| | | Sbjct 17337 GACCTGACC-TCCAGATTTCAACCTCCAGCCGTTCAGCTTCCAGTTTTTCACCCAGCTGG 17279 Query 77430 TCACACC 77436 |||| || Sbjct 17278 TCACGCC 17272 >seq133 Length=897885 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/118 (76%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 87330 TGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAA 87389 ||| |||| ||| || | ||| |||| || || || || ||| | |||| |||| ||| Sbjct 864323 TGCGCCCATTTTGCTGAGGTCTCTCTTGGACTGGAACGTGTAGGCCGTCAGTCCAGTAAA 864382 Query 87390 CACAGCACATGTTa--aaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||| || | || ||||| ||| || || || ||||||||||||||||||| Sbjct 864383 CACAGCACAGGTCAGGAACAAAGC--TTGCAGGATTGTAGAGTATTCATAGAAGGTCA 864438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397427817637090