Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq755 210 2e-49 seq735 84.2 2e-11 seq35 84.2 2e-11 >seq755 Length=318311 Score = 210 bits (232), Expect = 2e-49 Identities = 475/705 (67%), Gaps = 18/705 (3%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || ||||||||||| || || || ||| || Sbjct 111204 AAGTGGTTCACCCACGCCTCCCCGACTCTCTTCAACGCTGGAACCAACAGGCCACAGCTG 111145 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || ||||| || ||| ||||| |||||||| || || || Sbjct 111144 TCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTATGACACTCTG 111085 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT------ATCCACTGC-TC 53439 ||| ||||||||| ||||||||||| | | || || |||||| || |||| || Sbjct 111084 AAGCAGTGTGCCCTCATCTCCAAGTCGGCTGGAGGCATCGGTGTGGCGGTCAGCTGCATC 111025 Query 53440 GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGT 53499 | ||| ||| | || ||| || || || ||| | || | || |||| Sbjct 111024 --AGATCCACAGGAA-GCTAC----ATCTCTGGTACCAATGGCAACTCCAACGGGCTCGT 110972 Query 53500 GCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG 53559 || ||||| | || | |||||||||||| || |||||| |||||||||| ||| | Sbjct 110971 CCCCATGCTGAGAGTTTACAACAACACGGCGCGTTACGTCGACCAGGGTGGCAACAAGAG 110912 Query 53560 CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGA 53619 || | |||||||| ||| | |||||||||||| ||| | | || || ||||| Sbjct 110911 ACCCGGAGCCTTCGCCATGTACTTGGAGCCGTGGCACTTTGACGTGTTCGACTTCCTCGA 110852 Query 53620 GCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGT 53678 |||| ||| || | || ||| | | | | ||||| || ||| || || | Sbjct 110851 GCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTAC-GCCCTTT 110793 Query 53679 GGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCC 53738 |||| || || || |||||| | | |||||||| || |||| |||| |||||||| | Sbjct 110792 GGATCCCCGATCTGTTCATGAAGAGGGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTC 110733 Query 53739 CGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGG 53797 | |||| || || || || | | ||| || || ||||||||| | ||| | || Sbjct 110732 CCAACGCCTGTCCTGGACTGGACGAGTG-CTGGGGGGAGGAGTTTGAGGAGCTCTACACC 110674 Query 53798 ACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCA 53857 | ||| | | || | |||| ||| ||||| | || | ||| | || Sbjct 110673 AGGTATGAGAAGGAAGGGAGGGCCAAGCGTGTGGTGAAGGCTCAGCAGCTGTGGTACGCC 110614 Query 53858 ATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAAC 53917 ||| || || ||| ||||||||| |||||||||||| ||||| || | |||| Sbjct 110613 ATCATCGAGTCGCAGACGGAGACGGGTACGCCGTACATGCTGTACAAAGACGCCTGCAAC 110554 Query 53918 GAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||||||| |||| | ||| |||||| | |||||| Sbjct 110553 AGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAAC 110509 >seq735 Length=345074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 335209 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 335150 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 335149 AAGTCGAAGGGGTTCT 335134 >seq35 Length=1322159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| ||||| || | | || |||||||| || || | |||||| Sbjct 415121 TCATCCCTGCTGATCAGCTCATTGGAGTAGGTCAGACCAGGCATCAGGCCTCTCTTCTTT 415180 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| |||||||| || |||||| |||||||||||| || ||| ||||| || Sbjct 415181 AGCCAATAGATGGCAGCAAATGAACCAGAGAAGAAGATGCCCTCCACAGCTGCAAAAGCC 415240 Query 74892 ACAA 74895 |||| Sbjct 415241 ACAA 415244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176203716400