Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq755 221 1e-52 seq1721 178 1e-39 seq210 161 1e-34 >seq755 Length=318311 Score = 221 bits (244), Expect = 1e-52 Identities = 754/1150 (66%), Gaps = 60/1150 (5%) Strand=Plus/Plus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||||| |||||||| | ||| |||| ||| || |||||||||| Sbjct 110076 CCCACATGTCGTACTGCAGGATGCCCTTGCTGACTGGGGAG--CCCTCGTACGTCTCGTA 110133 Query 80598 CGGGCC---CTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAAT 80651 ||||| ||| | || |||||||| || || ||||| | || |||| || || Sbjct 110134 GGGGCCGAACTCGG-CT--GCCAGCTCGCAGCTCGCCTCCAGA---GCAGCGTAGTAGAT 110187 Query 80652 GCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 | ||| |||| | |||| | | || | |||| ||| || |||| | || Sbjct 110188 GGTCTCGAAGATGTGGATGTTGAG-CAGCTGAGCCTCGGGGCTTTCAAACGGGTGACGCA 110246 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 | | ||||| |||| || | || || || ||||| ||||||| | ||||||||||| Sbjct 110247 TGAGGATGAAGGCGTCTGCTAAACCTTGCACTCCGATTCCGATCGGCCTGTGGCGCTTGT 110306 Query 80771 TCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGC 80830 | || ||| || || || | |||||| |||| | ||||| | ||||||||| Sbjct 110307 TGGAATTCTCAGCTTCAGGCACTGGGTAGTAGTTGATGTCGATAATCTTGTTCAGGTT-- 110364 Query 80831 GTGTAACAACCCGT---GTAACATCATGAAGTTTCTGAAAGTCGAA--TTGGTTCCCCT- 80884 | | || | | || |||| ||||| | |||||| || | | ||| Sbjct 110365 -TTTGACGATTACTTTGGTGACATACGCCAGTTTTTTAAAGTCAAAAGTCCGCTCCGGGG 110423 Query 80885 TCAC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA--GCA 80940 | || | ||| | ||| | ||| |||||||| || || || ||||| ||| || Sbjct 110424 TGACGTACATGTTG--AGGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCATGGCT 110481 Query 80941 TCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTC 81000 |||| ||||||||||| ||||| | || |||| || || ||||| || | | Sbjct 110482 GGTGTAT--TCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 110539 Query 81001 TGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACC 81060 ||||| ||| |||||| ||||| ||||| ||||||||| ||||| ||||| | Sbjct 110540 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCCGTCTCCGTC 110599 Query 81061 TGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTG 81117 || |||| || |||||||| ||| | || | ||||| ||||| ||| | | Sbjct 110600 TGCGACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTT---GGCCCTC 110656 Query 81118 CCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACT--TGGCACCGTGA--AGTTCAG 81172 ||||| | ||||| ||| ||| ||| || || |||| | | || | || ||| Sbjct 110657 CCTTCCTTCTCATACCTGGTGTAGAGC-TCCTCAAACTCCTCCCCCCAGCACTCGTCCAG 110715 Query 81173 TGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCT 81232 | | || || |||| || |||||||| |||||| || | |||| || || Sbjct 110716 T----CCAGGACAGGCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCT 110771 Query 81233 TCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCAT 81292 ||||||| || |||||||| |||||| ||| ||||| | | | | |||||| | Sbjct 110772 TCATGAACAGATCGGGGATCCAAAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCT 110831 Query 81293 CACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGAT 81352 || ||| || |||||| ||||| | | ||| ||||| ||||||| | Sbjct 110832 TTCCTGTGTTCTTCTTCAGCTCGAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAAGT 110891 Query 81353 ACACGGCGA----TC--GACCCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCG 81406 ||| ||||| || | | |||| ||||||||||| ||||||||| || || Sbjct 110892 ACATGGCGAAGGCTCCGGGTCTCTTG---TTGCCACCCTGGTCGACGTAACGCGCCGTGT 110948 Query 81407 CGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATAC 81466 ||| | || | || ||| |||| || || | || | || || ||||| ||| Sbjct 110949 TGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCATTGGTACCAGAGATGT 111008 Query 81467 GCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAA 81526 || ||| | | ||||| | | ||||||||| || | | |||| || | Sbjct 111009 AGCTTCCTGTGGATCTGATGCAGCTGACCGCCACACCGATGCCTCCAGCCGACTTGGAGA 111068 Query 81527 TCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586 | | |||||| | |||| || ||||| || || |||||||| || | ||||||| | | Sbjct 111069 TGAGGGCACACTGCTTCAGAGTGTCATAGATGCCTTCGATGCTGTCGTCTTTCATGGCGA 111128 Query 81587 GCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCG 81646 ||| ||| ||||| |||| ||| || || || | || || ||||| || || |||| | Sbjct 111129 GCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCAGCGTTGAAGAGAGTCGGGGAGG 111188 Query 81647 CGTGAATGAA 81656 |||| |||| Sbjct 111189 CGTGGGTGAA 111198 >seq1721 Length=144067 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | || Sbjct 118156 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 118215 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || ||||||||||| ||||| || |||||| Sbjct 118216 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAG 118275 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 118276 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTACAAC 118335 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||||| |||||||| || || || || ||||||| Sbjct 118336 ATCCAAAAAGAATCCACCCTCCACCTTGTGCTGCGTCT 118373 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || || ||||| ||| | || Sbjct 117928 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 117987 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||||||||| ||||||||||| || ||||| || |||||| Sbjct 117988 GACACCATCGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 118047 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 118048 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 118107 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 118108 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 118145 >seq210 Length=679747 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| || || || ||||| ||| | | Sbjct 555533 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 555592 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| || || || |||||||| ||||| || ||||| |||||| Sbjct 555593 GACACCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGGATCCCTCCTGACCAG 555652 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||||||||| || || |||| ||| ||||| | ||||| || Sbjct 555653 CAGAGGCTGATATTTGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 555712 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || ||||| ||| |||||||| | || || Sbjct 555713 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTTAGGGGAGG 555759 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 555761 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACACTGGAGGTGGAGCCCAGC 555820 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | || |||||||| |||||||| ||||| || ||||| |||||| Sbjct 555821 GACACTATCGAGAACGTCAAAGCTAAAATCCAGGACAAAGAGGGGATCCCTCCTGACCAG 555880 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| |||||||| || || |||| ||| || || | ||||| || Sbjct 555881 CAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 555940 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || || ||||||| Sbjct 555941 ATCCAGAAAGAGTCCACCCTCCACCTGGTGCTGCGTCT 555978 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 |||||||||||||| ||||| ||||||||||| || || |||| ||| ||||| | ||| Sbjct 556326 GACCAGCAGCGTCTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTCTCTGAC 556385 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || |||| || || ||||| || || || ||| ||||||| || || ||| Sbjct 556386 TACAACATCCAGAAAGAGTCCACCCTCCACCTGGTCCTGCGTCTCCGTGGAGGA 556439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268924176160