Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1310 156 3e-33 seq1782 109 4e-19 seq1613 109 4e-19 >seq1310 Length=240470 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | |||||| |||||||| |||||||| | |||||||||||||| || || Sbjct 118499 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGGAGCGCATAGCTGGCGATGTTGAACGGC 118440 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || ||||| | |||||| ||||||||||| ||||| ||||| | | Sbjct 118439 ACTCCCAGACCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAC 118380 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| ||||| || | |||||||| || || |||||||||||| || |||| Sbjct 118379 ACGTAGAACTGGCAGAGAGCGTGGCAGGGCGGCAGAGCCATGAGGGGCAGGTCT 118326 Score = 129 bits (142), Expect = 5e-25 Identities = 147/194 (76%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||||| || || |||||||||||||| |||||||| || |||||||| Sbjct 116834 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGCCCCAGGTC 116775 Query 30283 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339 ||||| || | |||| ||| || |||||||| ||||| | |||||||||||| Sbjct 116774 GCCCTCCTCTC---GCTCTGTGAACCCGAGGTTGTCCAAGAAGTCCCGGGAACCGTTGGC 116718 Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCT-CTTTGGAGTTTGTGGACCCTCTGA--- 30395 |||||||| || || || ||||| || || | ||||| | || || ||||| ||| Sbjct 116717 ATCCCAGATTTTCACTCCTTTCTCTGACAGTTCCTTTGCATTTGTTGAACCCTGTGATGT 116658 Query 30396 CGAACCACAGCAGC 30409 |||| ||| |||| Sbjct 116657 AGAACAACATCAGC 116644 >seq1782 Length=134307 Score = 109 bits (120), Expect = 4e-19 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| ||||||||||| | ||| ||||||| |||| |||||| || || || ||||| || Sbjct 3752 CTCTCTGCTGAGGACGATGTTGATCCTGTTGCTCAAAGGTCTGTTTTTCTCTGGGATAGA 3693 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| || ||||| |||||||| |||||||||||| Sbjct 3692 GAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 3650 Score = 93.3 bits (102), Expect = 3e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 110569 GGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATA 110628 |||||||| ||||| | ||||||||| || ||||||| ||| |||||| | |||||||| Sbjct 1869 GGATGCCATGGCAGGTGTCCGTTGTTGCCCATGCCCAGGTCGGGACACACTGCCACGATC 1810 Query 110629 CCGTTCAGAATGAGGGGCATG 110649 |||||||||||| ||| |||| Sbjct 1809 CCGTTCAGAATGCGGGACATG 1789 >seq1613 Length=182461 Score = 109 bits (120), Expect = 4e-19 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| ||||||||||| | ||| ||||||| |||| |||||| || || || ||||| || Sbjct 172534 CTCTCTGCTGAGGACGATGTTGATCCTGTTGCTCAAAGGTCTGTTTTTCTCTGGGATAGA 172475 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| || ||||| |||||||| |||||||||||| Sbjct 172474 GAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 172432 Score = 93.3 bits (102), Expect = 3e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 110569 GGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATA 110628 |||||||| ||||| | ||||||||| || ||||||| ||| |||||| | |||||||| Sbjct 170651 GGATGCCATGGCAGGTGTCCGTTGTTGCCCATGCCCAGGTCGGGACACACTGCCACGATC 170592 Query 110629 CCGTTCAGAATGAGGGGCATG 110649 |||||||||||| ||| |||| Sbjct 170591 CCGTTCAGAATGCGGGACATG 170571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406281589799256