Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13]
5,818 sequences; 800,491,834 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 156 3e-33
seq1782 109 4e-19
seq1613 109 4e-19
>seq1310
Length=240470
Score = 156 bits (172), Expect = 3e-33
Identities = 139/174 (80%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || || | |||||| |||||||| |||||||| | |||||||||||||| || ||
Sbjct 118499 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGGAGCGCATAGCTGGCGATGTTGAACGGC 118440
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || ||||| || ||||| | |||||| ||||||||||| ||||| ||||| | |
Sbjct 118439 ACTCCCAGACCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAC 118380
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115
||||| ||||| || | |||||||| || || |||||||||||| || ||||
Sbjct 118379 ACGTAGAACTGGCAGAGAGCGTGGCAGGGCGGCAGAGCCATGAGGGGCAGGTCT 118326
Score = 129 bits (142), Expect = 5e-25
Identities = 147/194 (76%), Gaps = 10/194 (5%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||||| |||||||||| || || |||||||||||||| |||||||| || ||||||||
Sbjct 116834 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAGCCGTACACAGGCCCCAGGTC 116775
Query 30283 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339
||||| || | |||| ||| || |||||||| ||||| | ||||||||||||
Sbjct 116774 GCCCTCCTCTC---GCTCTGTGAACCCGAGGTTGTCCAAGAAGTCCCGGGAACCGTTGGC 116718
Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCT-CTTTGGAGTTTGTGGACCCTCTGA--- 30395
|||||||| || || || ||||| || || | ||||| | || || ||||| |||
Sbjct 116717 ATCCCAGATTTTCACTCCTTTCTCTGACAGTTCCTTTGCATTTGTTGAACCCTGTGATGT 116658
Query 30396 CGAACCACAGCAGC 30409
|||| ||| ||||
Sbjct 116657 AGAACAACATCAGC 116644
>seq1782
Length=134307
Score = 109 bits (120), Expect = 4e-19
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465
||| ||||||||||| | ||| ||||||| |||| |||||| || || || ||||| ||
Sbjct 3752 CTCTCTGCTGAGGACGATGTTGATCCTGTTGCTCAAAGGTCTGTTTTTCTCTGGGATAGA 3693
Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
|||||| ||||| || ||||| |||||||| ||||||||||||
Sbjct 3692 GAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 3650
Score = 93.3 bits (102), Expect = 3e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 110569 GGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATA 110628
|||||||| ||||| | ||||||||| || ||||||| ||| |||||| | ||||||||
Sbjct 1869 GGATGCCATGGCAGGTGTCCGTTGTTGCCCATGCCCAGGTCGGGACACACTGCCACGATC 1810
Query 110629 CCGTTCAGAATGAGGGGCATG 110649
|||||||||||| ||| ||||
Sbjct 1809 CCGTTCAGAATGCGGGACATG 1789
>seq1613
Length=182461
Score = 109 bits (120), Expect = 4e-19
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465
||| ||||||||||| | ||| ||||||| |||| |||||| || || || ||||| ||
Sbjct 172534 CTCTCTGCTGAGGACGATGTTGATCCTGTTGCTCAAAGGTCTGTTTTTCTCTGGGATAGA 172475
Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
|||||| ||||| || ||||| |||||||| ||||||||||||
Sbjct 172474 GAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 172432
Score = 93.3 bits (102), Expect = 3e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 110569 GGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATA 110628
|||||||| ||||| | ||||||||| || ||||||| ||| |||||| | ||||||||
Sbjct 170651 GGATGCCATGGCAGGTGTCCGTTGTTGCCCATGCCCAGGTCGGGACACACTGCCACGATC 170592
Query 110629 CCGTTCAGAATGAGGGGCATG 110649
|||||||||||| ||| ||||
Sbjct 170591 CCGTTCAGAATGCGGGACATG 170571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406281589799256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |