Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1721 98.7 7e-16 seq210 98.7 7e-16 >seq1721 Length=144067 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||||||||| || || || ||||| ||||| || || || Sbjct 117925 AACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 117984 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | ||||| ||||| ||||| | || || || Sbjct 117985 AGTGACACCATCGAGAATGTCAAGGC-TAAAATCCAGGACAAGGAAGGCATTCCCCCTGA 118043 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | || || || || ||||| || |||||||| | ||||| | ||| || Sbjct 118044 CCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 118103 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 118104 CAACATCCAGAAGGAGTCCAC 118124 >seq210 Length=679747 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || || || ||| Sbjct 555761 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACACTGGAGGTGGAGCCCAGC 555820 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | ||| ||||| |||||||| || | || || || || Sbjct 555821 GACACTATCGAGAACGTCAAAGCTAAAATCCAGGACAAAGAGGGGATCCCTCCTGACCAG 555880 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| || || |||||||| | |||||| | || |||||| Sbjct 555881 CAGAGGCTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 555940 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 555941 ATCCAGAAAGAGTCCAC 555957 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||| | || || || || ||||| || || || || || Sbjct 555530 AAGATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCC 555589 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| |||| | | |||||||| || | || || || Sbjct 555590 AGCGACACCATAGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAGGGGATCCCTCCTGA 555648 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | |||||||| || || || |||||||| | ||||| | || || Sbjct 555649 CCAGCAGAGGCTGATATTTGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTA 555708 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 555709 CAACATCCAGAAAGAGTCCAC 555729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985632795544