Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1721 141 2e-28 seq755 84.2 5e-11 >seq1721 Length=144067 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||| |||||||||||||||| ||||| || | | || | ||||| Sbjct 118368 CAGCACAAGGTGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 118309 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||| |||||||| | || ||||| || ||||| || |||||||| Sbjct 118308 CTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 118249 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 118248 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 118189 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | || || | ||| | ||||| Sbjct 118188 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 118156 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 118140 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 118081 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 118080 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 118021 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| ||||||||||| || || || || | ||||| || Sbjct 118020 CTGGATTTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 117961 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || | ||||| | || | ||||| || Sbjct 117960 CTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 117925 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||||||||| || || |||| ||||| || | | || | ||||| Sbjct 118596 CAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 118537 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 118536 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTC 118477 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 118476 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 118417 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || | || || | ||| | ||||| Sbjct 118416 CTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 118384 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||| ||||| || || |||| ||||| |||| | || | ||||| Sbjct 109109 CAGCACAAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 109050 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 109049 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 108990 >seq755 Length=318311 Score = 84.2 bits (92), Expect = 5e-11 Identities = 188/280 (67%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 193502 CTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGC 193561 ||||||| |||| | | |||||||||||| | ||| | ||| | ||| ||||| Sbjct 110539 CTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCCGTCTCCGT 110598 Query 193562 TTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGT-CGTTCTGGCCTTTC 193620 || | ||| ||| | ||| || | ||||| ||||| || | ||||| | | Sbjct 110599 CTGCGACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCT-TGGCCCTCC 110657 Query 193621 CTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGAC 193680 ||||| |||| ||| | ||| || |||||||| || | || || ||||| || | Sbjct 110658 CTTCCTTCTCATACCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGTC 110717 Query 193681 CGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGA 193740 | ||| | || || || | ||| ||| || | || |||||||||||||||| Sbjct 110718 CAGGACAGGCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGA 110777 Query 193741 AGAGGTCAGATGTCCAAATGGCGTAGAAAAGTTGTCTCGC 193780 | || || | |||||| |||||||||||| | ||| || Sbjct 110778 ACAGATCGGGGATCCAAAGGGCGTAGAAAAGGTCTCTGGC 110817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192442304997692