Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegastes_20partitus_20[refseq_20GCF_5F000690725.1_202014-05-13] 5,818 sequences; 800,491,834 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1310 138 9e-28 seq1782 104 2e-17 seq1613 104 2e-17 >seq1310 Length=240470 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | |||||| |||||||| |||||||| | |||||||||||||| || ||| Sbjct 118499 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGGAGCGCATAGCTGGCGATGTTGAACGGC 118440 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || || || | |||||| ||||| ||||| ||||| ||||| | | Sbjct 118439 ACTCCCAGACCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAC 118380 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| || | || ||||| || || || |||||||| Sbjct 118379 ACGTAGAACTGGCAGAGAGCGTGGCAGGGCGGCAGAGCCATGAG 118336 Score = 113 bits (124), Expect = 4e-20 Identities = 130/172 (76%), Gaps = 10/172 (6%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC---G 30073 || |||||||||||||| |||||||| || |||||||| ||||| || | |||| | Sbjct 116812 AAGTGCCTCCACTGGAAGCCGTACACAGGCCCCAGGTCGCCCTCCTCTC---GCTCTGTG 116756 Query 30074 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30133 || || |||||||| ||||| | |||||||||||| |||||||| || || || ||| Sbjct 116755 AACCCGAGGTTGTCCAAGAAGTCCCGGGAACCGTTGGCATCCCAGATTTTCACTCCTTTC 116696 Query 30134 TCGGAGAGCT-CTTTGGAGTTTGTGGACCCTCTGA---CGAACCACAGCAGC 30181 || || || | ||||| | || || ||||| ||| |||| ||| |||| Sbjct 116695 TCTGACAGTTCCTTTGCATTTGTTGAACCCTGTGATGTAGAACAACATCAGC 116644 >seq1782 Length=134307 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 |||| ||||||||||| ||||| | ||||||||| || ||||||| ||| |||||| || Sbjct 1878 AGTCGAACCGGATGCCATGGCAGGTGTCCGTTGTTGCCCATGCCCAGGTCGGGACACACT 1819 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATG 114532 |||||||| |||||||||||| ||| |||| Sbjct 1818 GCCACGATCCCGTTCAGAATGCGGGACATG 1789 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||| ||||||||||| | ||| | ||||| |||| |||||| || || || ||||| || Sbjct 3752 CTCTCTGCTGAGGACGATGTTGATCCTGTTGCTCAAAGGTCTGTTTTTCTCTGGGATAGA 3693 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 3692 GAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 3650 >seq1613 Length=182461 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 |||| ||||||||||| ||||| | ||||||||| || ||||||| ||| |||||| || Sbjct 170660 AGTCGAACCGGATGCCATGGCAGGTGTCCGTTGTTGCCCATGCCCAGGTCGGGACACACT 170601 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATG 114532 |||||||| |||||||||||| ||| |||| Sbjct 170600 GCCACGATCCCGTTCAGAATGCGGGACATG 170571 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||| ||||||||||| | ||| | ||||| |||| |||||| || || || ||||| || Sbjct 172534 CTCTCTGCTGAGGACGATGTTGATCCTGTTGCTCAAAGGTCTGTTTTTCTCTGGGATAGA 172475 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 172474 GAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 172432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134400236748